BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0784000 Os03g0784000|AK100003
         (382 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0784000  FAD dependent oxidoreductase family protein         668   0.0  
Os12g0597400  HI0933-like protein family protein                  101   9e-22

>Os03g0784000 FAD dependent oxidoreductase family protein
          Length = 382

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/353 (92%), Positives = 328/353 (92%)

Query: 30  LLAARGVAVTLFDSXXXXXXXXXXXXEVMEDGTELRFDHGAPYFTVSNDEVARVVSGWEA 89
           LLAARGVAVTLFDS            EVMEDGTELRFDHGAPYFTVSNDEVARVVSGWEA
Sbjct: 30  LLAARGVAVTLFDSGRGAGGRMAQRREVMEDGTELRFDHGAPYFTVSNDEVARVVSGWEA 89

Query: 90  RGLVAEWKAMFACFDREAGKFTDFEKEGTIKKYVGVPGMNSICKSLCLEDGVVAKFGVTI 149
           RGLVAEWKAMFACFDREAGKFTDFEKEGTIKKYVGVPGMNSICKSLCLEDGVVAKFGVTI
Sbjct: 90  RGLVAEWKAMFACFDREAGKFTDFEKEGTIKKYVGVPGMNSICKSLCLEDGVVAKFGVTI 149

Query: 150 GRMDWIQDRSSWLLASLDGRDLGHFDYVVATDKNIASPRFSGLTGRXXXXXXXXXXXXXM 209
           GRMDWIQDRSSWLLASLDGRDLGHFDYVVATDKNIASPRFSGLTGR             M
Sbjct: 150 GRMDWIQDRSSWLLASLDGRDLGHFDYVVATDKNIASPRFSGLTGRPPPLDLSLLPQLSM 209

Query: 210 MIQDIPVRPCFALMLAFSEPLTKVPVQGFSFNNSDYLSWAFCDSSKPGRAHVPLNSQSWV 269
           MIQDIPVRPCFALMLAFSEPLTKVPVQGFSFNNSDYLSWAFCDSSKPGRAHVPLNSQSWV
Sbjct: 210 MIQDIPVRPCFALMLAFSEPLTKVPVQGFSFNNSDYLSWAFCDSSKPGRAHVPLNSQSWV 269

Query: 270 LHSTAEYASKVINNIGPRKPSADALAKVAEELLKEFQATGLNIPQPIFMKAHRWGSAFPA 329
           LHSTAEYASKVINNIGPRKPSADALAKVAEELLKEFQATGLNIPQPIFMKAHRWGSAFPA
Sbjct: 270 LHSTAEYASKVINNIGPRKPSADALAKVAEELLKEFQATGLNIPQPIFMKAHRWGSAFPA 329

Query: 330 IAISGDDKCVWDKSMKLAICGDFCTSPSVEGAVLSGMRGASKILRCLNFPSGL 382
           IAISGDDKCVWDKSMKLAICGDFCTSPSVEGAVLSGMRGASKILRCLNFPSGL
Sbjct: 330 IAISGDDKCVWDKSMKLAICGDFCTSPSVEGAVLSGMRGASKILRCLNFPSGL 382



>Os12g0597400 HI0933-like protein family protein
          Length = 497

 Score =  101 bits (252), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 152/365 (41%), Gaps = 49/365 (13%)

Query: 31  LAARGVAVTLFDSXXXXXXXXXXXXEVMEDG-----TELRFDHGAPYFTVSNDEVARVVS 85
           LAARGV   +FD+             +   G      +L FDH A +FT S++   RVV 
Sbjct: 107 LAARGVRAVVFDTGMHGLGGRMATRAIAAAGDQQQQQQLVFDHAAQFFTASDERFKRVVD 166

Query: 86  GWEARGLVAEWKAMFACFDREAGKFTDFEKEGTIKKYVGVPGMNSICKSLCLEDGVVAKF 145
            W  +GLV EW  +    D  AG         +  +Y+GV GM  +  ++  E  +    
Sbjct: 167 EWMDKGLVREWGGLIGELD--AGGHFRPMPSSSPPRYIGVDGMRPLADAILPESDL---- 220

Query: 146 GVTIGRMDWIQDRSS----WLLASLDGRDLGHFDYVVATDKNIASPRFSGLTGRXXXXXX 201
            + + R  WI         W L   + +  G +D +V       + R    +G       
Sbjct: 221 -IEVVRPCWISKLEPFNGLWRLFE-NEKPHGQYDAIVIAHNGKCANRLLSTSG------- 271

Query: 202 XXXXXXXMMIQDIPVRPCFALMLAFSEPLTKVP-------VQGFSFNNSDYLSWAFCDSS 254
                    ++ + +   +AL+ AF +PL  +P        +G    + D LSW   ++ 
Sbjct: 272 --LPLLTRQMKRLQLSSVWALLAAFQDPL-PIPQTDSYGTFEGAFVKDVDSLSWMANNTQ 328

Query: 255 KPGRAHVPLNS---QSWVLHSTAEYASKVINNIGPRKPSADALAKVAEELLKEFQ-ATGL 310
           K      PL +   + W   STA Y  +  N +           KV E++L+  + A GL
Sbjct: 329 K----LFPLQTGRPECWTFFSTAAYGKR--NKVPQENIPKITAEKVKEDMLRGVELALGL 382

Query: 311 ---NIPQPIFMKAHRWGSAFPAIAISGDDKCVWDKSMKLAICGDFCTSPSVEGAVLSGMR 367
              ++ QP + +   WG+A P    +    C++D   +  ICGD+ T  S+E AVLSGM 
Sbjct: 383 SRGSLQQPFYTRVQLWGAALP--MNTPGVPCIFDPQGRAGICGDWLTGSSIEAAVLSGMS 440

Query: 368 GASKI 372
            A+ I
Sbjct: 441 LANHI 445



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,718,929
Number of extensions: 470921
Number of successful extensions: 932
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 930
Number of HSP's successfully gapped: 2
Length of query: 382
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 279
Effective length of database: 11,657,759
Effective search space: 3252514761
Effective search space used: 3252514761
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)