BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0777500 Os03g0777500|AK062835
         (183 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0777500  Protein of unknown function DUF1068 family pro...   235   1e-62
Os04g0501800  Protein of unknown function DUF1068 family pro...    90   8e-19

>Os03g0777500 Protein of unknown function DUF1068 family protein
          Length = 183

 Score =  235 bits (600), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 121/151 (80%), Positives = 121/151 (80%)

Query: 33  YIVGPQLYWHASEALGRSTGXXXXXXXXXXXXXXXXXPEDCSKQFKDVKSRASGEETEKS 92
           YIVGPQLYWHASEALGRSTG                 PEDCSKQFKDVKSRASGEETEKS
Sbjct: 33  YIVGPQLYWHASEALGRSTGACPACDCDCDARPLLALPEDCSKQFKDVKSRASGEETEKS 92

Query: 93  FTELLIEELKXXXXXXXXXXXXXDVKLLEAKKLASQYQKEADKCSSGMDTCEEAREKSSE 152
           FTELLIEELK             DVKLLEAKKLASQYQKEADKCSSGMDTCEEAREKSSE
Sbjct: 93  FTELLIEELKQREEEATQAQQQADVKLLEAKKLASQYQKEADKCSSGMDTCEEAREKSSE 152

Query: 153 ALVEQRKLTALWEERARELGWKPGNIKPHQT 183
           ALVEQRKLTALWEERARELGWKPGNIKPHQT
Sbjct: 153 ALVEQRKLTALWEERARELGWKPGNIKPHQT 183



>Os04g0501800 Protein of unknown function DUF1068 family protein
          Length = 196

 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 62/87 (71%)

Query: 88  ETEKSFTELLIEELKXXXXXXXXXXXXXDVKLLEAKKLASQYQKEADKCSSGMDTCEEAR 147
           E EK F +LL EELK             +  L+EAK+ A+QYQ+EA+KC++  +TCEEAR
Sbjct: 101 EMEKQFVDLLNEELKLQQIVAEEHSHHMNATLVEAKRQATQYQREAEKCNAATETCEEAR 160

Query: 148 EKSSEALVEQRKLTALWEERARELGWK 174
           E+S  A+ +++KLTALWE+RAR+LGW+
Sbjct: 161 ERSEAAISKEKKLTALWEQRARQLGWQ 187



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.309    0.125    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,625,747
Number of extensions: 92003
Number of successful extensions: 238
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 2
Length of query: 183
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 88
Effective length of database: 12,075,471
Effective search space: 1062641448
Effective search space used: 1062641448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 153 (63.5 bits)