BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0777100 Os03g0777100|J033034J15
(347 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0777100 Conserved hypothetical protein 704 0.0
Os02g0168300 Hypothetical protein 108 5e-24
Os06g0670100 Hypothetical protein 66 3e-11
>Os03g0777100 Conserved hypothetical protein
Length = 347
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/347 (100%), Positives = 347/347 (100%)
Query: 1 FNISMVLLNYDSSSWKECDASNQNDSEAVCKSIEVEVVGNDDSAINCGNKLTALDSPSFT 60
FNISMVLLNYDSSSWKECDASNQNDSEAVCKSIEVEVVGNDDSAINCGNKLTALDSPSFT
Sbjct: 1 FNISMVLLNYDSSSWKECDASNQNDSEAVCKSIEVEVVGNDDSAINCGNKLTALDSPSFT 60
Query: 61 CRDDINLVESKSLPISTPSEATAEIQTPATTHAPDQEELRNENNTRTCSEHTYEAVSSVE 120
CRDDINLVESKSLPISTPSEATAEIQTPATTHAPDQEELRNENNTRTCSEHTYEAVSSVE
Sbjct: 61 CRDDINLVESKSLPISTPSEATAEIQTPATTHAPDQEELRNENNTRTCSEHTYEAVSSVE 120
Query: 121 ASGSCEKLRLESCQPNISDEDFKYAKNDSLVSVELSISNECSLFQSSEGSVSSCNKRREN 180
ASGSCEKLRLESCQPNISDEDFKYAKNDSLVSVELSISNECSLFQSSEGSVSSCNKRREN
Sbjct: 121 ASGSCEKLRLESCQPNISDEDFKYAKNDSLVSVELSISNECSLFQSSEGSVSSCNKRREN 180
Query: 181 SSTESVEKCLKSEPLVHSSRKKVLKGNDSEVEFPSLSQWLKPPNPKVFRDEPLTSDRSHS 240
SSTESVEKCLKSEPLVHSSRKKVLKGNDSEVEFPSLSQWLKPPNPKVFRDEPLTSDRSHS
Sbjct: 181 SSTESVEKCLKSEPLVHSSRKKVLKGNDSEVEFPSLSQWLKPPNPKVFRDEPLTSDRSHS 240
Query: 241 AKSSEEDRPIIGLVAAHWRDTEPDTFTPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERL 300
AKSSEEDRPIIGLVAAHWRDTEPDTFTPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERL
Sbjct: 241 AKSSEEDRPIIGLVAAHWRDTEPDTFTPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERL 300
Query: 301 EKALSDEKLLSQRKCSSGNTSQLSGLEGEENDTAASTSNYLCVAAIT 347
EKALSDEKLLSQRKCSSGNTSQLSGLEGEENDTAASTSNYLCVAAIT
Sbjct: 301 EKALSDEKLLSQRKCSSGNTSQLSGLEGEENDTAASTSNYLCVAAIT 347
>Os02g0168300 Hypothetical protein
Length = 389
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 130/291 (44%), Gaps = 36/291 (12%)
Query: 56 SPSFTCRDDINLVESKS-LPISTPSEATAEIQTPATTHAPDQEELRNENNTRTCSEHTYE 114
S F C + L +S P TP ++QTP T + +E LR+ RT + Y
Sbjct: 107 SEGFNCDEHSALKHEQSDSPHPTPLVLRGDMQTPGTLNTAYKESLRSGKRARTNKQFIYP 166
Query: 115 AVSSVEASGSCEKLRLESCQPNIS--DEDFKYAKNDSLVSVELSISNECSL--------- 163
+ +E +LR +S P +S +Y D + SI+N +
Sbjct: 167 VLRPIENKLQWMELRDDSS-PILSFNPPKRRYLSTDCSAKPQESITNSMATQTARITPAS 225
Query: 164 --FQ-----SSEGSVSSCNKRRENSSTESVEKCLKSEPLVHSSRKKVLKGNDSEVEFPSL 216
F +G +S + EN S + ++ + + S RK V SL
Sbjct: 226 FSFHDITAGQDQGVISPEEHKSENDSRKLLDDADQLKYNADSERKGVA----------SL 275
Query: 217 SQWLKPP----NPKVFRDEPLTSDRSHSAKSSEEDRPIIGLVAAHWRDTEPDTFTPKWWD 272
S WLKPP + + + R + S D PI +W + +P PK WD
Sbjct: 276 SCWLKPPSSAGGSQSDTEGKVVKQRCYE-NSVFTDLPIFTASGLNWDNDKPTPVLPKVWD 334
Query: 273 GNGIPNSTNKYKEDQKVSWHATPFEERLEKALSDEKLLSQRKCSSGNTSQL 323
GNGIPN+T KYKEDQKVSWHATPFEERL K LSDEK QRK SG QL
Sbjct: 335 GNGIPNTTTKYKEDQKVSWHATPFEERLMKVLSDEKPHHQRKI-SGKLIQL 384
>Os06g0670100 Hypothetical protein
Length = 413
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 105/257 (40%), Gaps = 51/257 (19%)
Query: 74 PISTPSEATAEIQTPATTHAPDQEELRNENNTRTCSEHTYEAVSSVEASGSCEKLRL-ES 132
P TP ++QTP T + + + RT + Y E +K++L +S
Sbjct: 197 PFHTPLVLRDDMQTPRTVYTSHKGS--SGKRVRTRKQFAYPIFRPTE--NKLQKMQLSDS 252
Query: 133 CQPNISDEDFKYAKNDSLVSVELSISNECSLFQSSEGSVSSCNKRRENSSTESVEKCLKS 192
+ K +SL S + E S +Q + +R +++S E++E C
Sbjct: 253 AKMTQQISSDSVVKGESLNSSHFPL--EVSKYQLDRQRLLDAGERSKSNSDENIEVC--- 307
Query: 193 EPLVHSSRKKVLKGNDSEVEFPSLSQWLK---PPNPKVFRDEPLTSDRSHSAKSSEEDRP 249
SLS+WLK N DE + H+ +SE++
Sbjct: 308 ----------------------SLSRWLKSSPAGNTNQMYDENNLIEEGHAFMTSEDN-- 343
Query: 250 IIGLVAAHWRDTEPDTFTP---KWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSD 306
+ D TP K D + IPN++ KY EDQ VSWH+TPFEERL K LSD
Sbjct: 344 -----------VDVDNHTPRLSKARDCHCIPNTSRKYGEDQHVSWHSTPFEERLIKVLSD 392
Query: 307 EKLLSQRKCSSGNTSQL 323
E++ RK G L
Sbjct: 393 EEVPPTRKLVPGRLLYL 409
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.306 0.122 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,586,440
Number of extensions: 545546
Number of successful extensions: 1506
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1503
Number of HSP's successfully gapped: 3
Length of query: 347
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 245
Effective length of database: 11,709,973
Effective search space: 2868943385
Effective search space used: 2868943385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 156 (64.7 bits)