BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0775500 Os03g0775500|AK121695
         (154 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0775500  Protein of unknown function DUF59 domain conta...   256   3e-69
Os04g0595200  Similar to UPF0195 protein CG30152                  172   6e-44

>Os03g0775500 Protein of unknown function DUF59 domain containing protein
          Length = 154

 Score =  256 bits (655), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 127/154 (82%), Positives = 127/154 (82%)

Query: 1   MTVGMINANPVVHERPERXXXXXXXXXXXXLDVFDTVRDIKDPEHPYXXXXXXXXXXXXX 60
           MTVGMINANPVVHERPER            LDVFDTVRDIKDPEHPY             
Sbjct: 1   MTVGMINANPVVHERPERAAHPHPADAIDALDVFDTVRDIKDPEHPYSLEQLSVLSEESV 60

Query: 61  XXDEKLGRIQITFTPTVQHCSMATVIGLCLRLKLMQNFPPHFKIDIKVAPGSLANEESVN 120
             DEKLGRIQITFTPTVQHCSMATVIGLCLRLKLMQNFPPHFKIDIKVAPGSLANEESVN
Sbjct: 61  SVDEKLGRIQITFTPTVQHCSMATVIGLCLRLKLMQNFPPHFKIDIKVAPGSLANEESVN 120

Query: 121 KQLNDKERVAAALENPNLRQLVDECLCSNDSHSH 154
           KQLNDKERVAAALENPNLRQLVDECLCSNDSHSH
Sbjct: 121 KQLNDKERVAAALENPNLRQLVDECLCSNDSHSH 154



>Os04g0595200 Similar to UPF0195 protein CG30152
          Length = 158

 Score =  172 bits (437), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 84/153 (54%), Positives = 106/153 (69%), Gaps = 7/153 (4%)

Query: 1   MTVGMINANPVVHERPERXXXXX-------XXXXXXXLDVFDTVRDIKDPEHPYXXXXXX 53
           M VG+INANPVV+E+ ER                   L++FD +RDIKDPEHPY      
Sbjct: 1   MVVGLINANPVVYEKKERRSRQAPETTDENAAEAIDQLEIFDHIRDIKDPEHPYSLEELN 60

Query: 54  XXXXXXXXXDEKLGRIQITFTPTVQHCSMATVIGLCLRLKLMQNFPPHFKIDIKVAPGSL 113
                    +++L  +++TFTPTV+ CSMATVIGLCLR+KLM++ PP +K+DI+VAPGS 
Sbjct: 61  VVTEDSVEINDELSHVRVTFTPTVERCSMATVIGLCLRVKLMRSLPPRYKVDIRVAPGSH 120

Query: 114 ANEESVNKQLNDKERVAAALENPNLRQLVDECL 146
           A E +VNKQLNDKERVAAALENPNL  +V+ECL
Sbjct: 121 ATETAVNKQLNDKERVAAALENPNLLDIVEECL 153



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,337,684
Number of extensions: 132872
Number of successful extensions: 283
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 2
Length of query: 154
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 62
Effective length of database: 12,232,113
Effective search space: 758391006
Effective search space used: 758391006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)