BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0774700 Os03g0774700|Os03g0774700
(389 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0774700 Polynucleotidyl transferase, Ribonuclease H fo... 761 0.0
Os01g0944200 Polynucleotidyl transferase, Ribonuclease H fo... 113 3e-25
Os05g0123900 69 5e-12
>Os03g0774700 Polynucleotidyl transferase, Ribonuclease H fold domain containing
protein
Length = 389
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/389 (95%), Positives = 371/389 (95%)
Query: 1 MDPEALMQISKLPKPVCLNQSEDAPGTVLAFKGPVAAIGSPSKLYDISSLEVVDDDVEKF 60
MDPEALMQISKLPKPVCLNQSEDAPGTVLAFKGPVAAIGSPSKLYDISSLEVVDDDVEKF
Sbjct: 1 MDPEALMQISKLPKPVCLNQSEDAPGTVLAFKGPVAAIGSPSKLYDISSLEVVDDDVEKF 60
Query: 61 LSDLNLAMADMXXXXXXXXXXXXXXXXXXIQSMKDEYIRDIVPVFDYAAYTHGPTHSILK 120
LSDLNLAMADM IQSMKDEYIRDIVPVFDYAAYTHGPTHSILK
Sbjct: 61 LSDLNLAMADMKKERDALAKKEALEEEEDIQSMKDEYIRDIVPVFDYAAYTHGPTHSILK 120
Query: 121 RMPVYLSALDLMNSKREMTRYRWECLLAHILKKRIIIADDWENSYGKIKILFHEFIMEDY 180
RMPVYLSALDLMNSKREMTRYRWECLLAHILKKRIIIADDWENSYGKIKILFHEFIMEDY
Sbjct: 121 RMPVYLSALDLMNSKREMTRYRWECLLAHILKKRIIIADDWENSYGKIKILFHEFIMEDY 180
Query: 181 DDGKPIFMGVCDGQFIQLFKADGTPEEFGLATLAYILWKRNILIAARVLKGVLCPNNNVA 240
DDGKPIFMGVCDGQFIQLFKADGTPEEFGLATLAYILWKRNILIAARVLKGVLCPNNNVA
Sbjct: 181 DDGKPIFMGVCDGQFIQLFKADGTPEEFGLATLAYILWKRNILIAARVLKGVLCPNNNVA 240
Query: 241 ESLACSALMQDCLLREDVDHLSILTDSGAVHRAISGEPVSEHGPNSDEYALLKFLASKFK 300
ESLACSALMQDCLLREDVDHLSILTDSGAVHRAISGEPVSEHGPNSDEYALLKFLASKFK
Sbjct: 241 ESLACSALMQDCLLREDVDHLSILTDSGAVHRAISGEPVSEHGPNSDEYALLKFLASKFK 300
Query: 301 TCTSTQQPREVIFPVDQLIREMEESTNVRDTLEKVLAKFAPHFGGQPLFRLSQNSSAKDI 360
TCTSTQQPREVIFPVDQLIREMEESTNVRDTLEKVLAKFAPHFGGQPLFRLSQNSSAKDI
Sbjct: 301 TCTSTQQPREVIFPVDQLIREMEESTNVRDTLEKVLAKFAPHFGGQPLFRLSQNSSAKDI 360
Query: 361 INSLVKSASSIITVQKRKAETEDGGVQIR 389
INSLVKSASSIITVQKRKAETEDGGVQIR
Sbjct: 361 INSLVKSASSIITVQKRKAETEDGGVQIR 389
>Os01g0944200 Polynucleotidyl transferase, Ribonuclease H fold domain containing
protein
Length = 431
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 135/281 (48%), Gaps = 22/281 (7%)
Query: 115 THSILKRMPVYLSALDLMNSKREMTRYRWECLLAHILKKRIIIADDWENSYGKIKILFHE 174
T+++LK+ P YLSALD+ K + W L HI K R+I+ DDW YG ++ H
Sbjct: 8 TNNLLKKSPRYLSALDVTTEKEILLEDEWTLFLEHIFKHRVIVVDDWTKCYGTVQTFLHS 67
Query: 175 FIMEDYDDGKPIFMGVCDGQFIQLFKADGTPEEFGLATLAYILWKRNILIAARVLKGVLC 234
E D F G CD F E+ G A LA++++K L+ A V V C
Sbjct: 68 SDAESCSDS---FKGECDASFC---------EQTGKAKLAFVIFKEGKLVWAEVFHEVPC 115
Query: 235 PNNNVAESLACSALMQDCLLREDVDHL--SILTDSGAVHRAISGE-PVSEHGPNSDEYAL 291
+ AE+LA AL+ + D++ L ++ TD+ + ++GE + PN +
Sbjct: 116 KSVVEAEALAVIALLFKLI---DLNLLRGTVWTDNKVCYNVLNGEYEIKVDDPNRSLFLF 172
Query: 292 LKFLASKFKTCTSTQQPREVIFPVDQLIREMEESTNVRDTLE-KVLAKFAPHFGGQPLFR 350
L+ L +F++ T +PRE++ D+L+ +++ R+ L +L K P QP FR
Sbjct: 173 LRSLRGRFESLTPVWKPRELLLIPDRLVSMVDDPLISRNRLVLSILEKTVPIL-SQPQFR 231
Query: 351 LSQNSSAKDIINSL--VKSASSIITVQKRKAETEDGGVQIR 389
+S +S + I + K S+ K E+ED ++
Sbjct: 232 ISWSSYLRTIFDKRDGGKQISNTTNEIKESDESEDSICWVK 272
>Os05g0123900
Length = 662
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 113/244 (46%), Gaps = 18/244 (7%)
Query: 123 PVYLSALDLMNSKREMTRYRWECLLAHILKKRIIIADDWENSYGKIKILFHEFIMEDYDD 182
P+YLSALD+M + M RW L+ + +KRI++ ++WE S G I+ + H+ + +
Sbjct: 298 PIYLSALDIMKTLIAMEPSRWSYLMDFLREKRILVTENWEVSLGSIECIMHDDSISFMMN 357
Query: 183 GKPIFMGVCDGQFIQLFKADGTPEEFGLATLAY-ILWKRNILIAARVLKGVLCPNNNVAE 241
G+ +F G DG++ GT G A L I + ++ + + V C + AE
Sbjct: 358 GRVVFKGQSDGRY-----NHGT----GTADLCTAITGEATDIVDCAIYREVPCNSPTHAE 408
Query: 242 SLACSALMQDCLLREDVDHLSILTDSGAVHRAISGE-PVSEHGPNSDEYALLKFLASKFK 300
L L + + + + + TD+ V + P++ + D +L+ + F+
Sbjct: 409 LLGMYVLERRAISLK-ILLFDVKTDNAFVSETVRDMFPITPNTTEKDLCQVLRSMKVYFE 467
Query: 301 TCTSTQQPREVIFPVDQLIREMEESTNVRDTLEKVLAKFAPHFGGQPLFRLSQNSSA--K 358
+PRE + VD L++ + T+E + K+A + P+FR Q + K
Sbjct: 468 HFNCRCEPREKLELVDSLMKMKDNEM----TMESIKDKWAHYLLRLPVFRAHQPTKTIRK 523
Query: 359 DIIN 362
D IN
Sbjct: 524 DYIN 527
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,281,510
Number of extensions: 480059
Number of successful extensions: 931
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 928
Number of HSP's successfully gapped: 3
Length of query: 389
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 286
Effective length of database: 11,657,759
Effective search space: 3334119074
Effective search space used: 3334119074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)