Os01g0944200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Polynucleotidyl transferase, Ribonuclease H fold domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0944200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Polynucleotidyl transferase, Ribonuclease H fold domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.08 | 0.336 | 13.7 | -0.833 | 0.46 | 0.237 | 0.468 | 4.34 | 0.409 | 23.9 | 29.6 | 1662 | -- | -- |
| 53.33 | 0.34 | 13.6 | -0.00541 | 0.457 | 0.749 | 0.323 | -- | 0.487 | 23.7 | 30 | 1749 | -- | -- |
| 51.82 | 0.335 | 13.7 | -0.81 | 0.461 | 0.271 | -- | 4.39 | 0.416 | 23.5 | 29.7 | 1772 | -- | -- |
| 53.92 | 0.342 | 13.6 | 0.0359 | 0.462 | 0.771 | -- | -- | 0.504 | 23.4 | 29.84 | 1762 | -- | -- |
| 65.08 | 0.376 | 13.7 | -0.765 | -- | 0.233 | -- | 4.31 | 0.426 | -- | 29.8 | 1715 | -- | -- |
| 72.68 | 0.4 | 13.6 | -0.147 | 0.428 | -- | 0.401 | -- | 0.575 | 23.9 | -- | -- | -- | -- |
| 73.36 | 0.401 | 13.6 | -0.163 | 0.427 | -- | -- | -- | 0.574 | 23.8 | -- | -- | -- | -- |
| 67 | 0.381 | 13.6 | 0.0498 | -- | 0.709 | -- | -- | 0.537 | -- | 29.77 | 1707 | -- | -- |
| 53.96 | 0.342 | 13.6 | -- | 0.463 | 0.767 | -- | -- | 0.5 | 23.4 | 29.86 | 1765 | -- | -- |
| 84.82 | 0.43 | 13.6 | -0.15 | -- | -- | -- | -- | 0.579 | -- | -- | -- | -- | -- |
| 74.06 | 0.403 | 13.6 | -- | 0.425 | -- | -- | -- | 0.592 | 23.7 | -- | -- | -- | -- |
| 67.05 | 0.381 | 13.6 | -- | -- | 0.706 | -- | -- | 0.532 | -- | 29.8 | 1707 | -- | -- |
| 85.41 | 0.431 | 13.6 | -- | -- | -- | -- | -- | 0.596 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.31 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 9 |
| 3 | 50.34 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 8 | 50.34 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 16 |
| 9 | 50.35 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 17 | 50.93 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 32 | 50.93 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 5 |
| 37 | 51.44 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 8 |
| 38 | 51.48 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 40 | 51.48 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 13 |
| 45 | 51.49 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 10 | 7 |
| 47 | 51.49 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 6 | 11 |
| 49 | 51.49 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 21 |
| 50 | 51.50 | temperature | 30.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 140 | 51.67 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 152 | 51.69 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 154 | 51.69 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 156 | 51.70 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 159 | 51.70 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 165 | 51.71 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 169 | 51.72 | temperature | 30.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 172 | 51.72 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 225 | 51.75 | temperature | 30.0 | 1440 | < th | dose independent | no | NA | NA |
| 251 | 51.75 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 278 | 51.76 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 359 | 51.85 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 367 | 51.89 | temperature | 30.0 | 1440 | > th | dose independent | no | NA | NA |
| 467 | 51.91 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 503 | 51.98 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 545 | 52.20 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 557 | 52.26 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 632 | 52.48 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 674 | 52.59 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 692 | 52.59 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 704 | 52.71 | humidity | 50.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 706 | 52.71 | wind | 5.0 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 711 | 52.74 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 715 | 52.75 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 730 | 52.75 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 732 | 52.76 | wind | 5.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 735 | 52.77 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 736 | 52.77 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 739 | 52.77 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 755 | 52.83 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 757 | 52.85 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 762 | 52.87 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 6 |
| 763 | 52.87 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 770 | 52.89 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 781 | 52.92 | wind | 5.0 | 43200 | > th | dose independent | rect. | 17 | 17 |
| 798 | 52.94 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 821 | 52.98 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 840 | 53.02 | wind | 3.0 | 43200 | > th | dose dependent | sin | 11 | NA |
| 842 | 53.03 | wind | 5.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 846 | 53.06 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 878 | 53.14 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 883 | 53.18 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 945 | 53.39 | humidity | 60.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 947 | 53.39 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 999 | 53.51 | wind | 5.0 | 43200 | < th | dose independent | rect. | 9 | 1 |