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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0774700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Polynucleotidyl transferase, Ribonuclease H fold domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.38 (0.0323) R2 : 0.000428
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0301 (0.0681) R2dN8 : 0.000553 R2N8 : 0.000428
σ : 0.609
deviance : 170.11
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
163.38 0.601 3.38 0.0335 0.0774 -0.0487 -1.08 -1.61 0.0207 6.15 78 405 -- --
168.25 0.604 3.38 0.119 0.0107 -0.135 -0.273 -- 0.0409 6.7 81.05 330 -- --
165.36 0.599 3.38 0.0465 0.0592 -0.0704 -- -1.11 0.0287 6.5 78 400 -- --
168.23 0.604 3.37 0.109 0.00498 -0.144 -- -- 0.0458 18.4 81.23 330 -- --
165.41 0.599 3.37 0.0747 -- -0.101 -- -1.05 0.0415 -- 78 400 -- --
168.97 0.609 3.37 0.116 0.117 -- 0.0972 -- 0.0408 4.54 -- -- -- --
168.98 0.609 3.37 0.115 0.12 -- -- -- 0.0403 5.01 -- -- -- --
168.23 0.604 3.37 0.109 -- -0.141 -- -- 0.0457 -- 81.19 330 -- --
168.53 0.605 3.38 -- 0.019 -0.154 -- -- 0.0298 15.5 81.93 329 -- --
169.74 0.609 3.37 0.12 -- -- -- -- 0.0433 -- -- -- -- --
169.33 0.609 3.37 -- 0.122 -- -- -- 0.0274 4.98 -- -- -- --
168.54 0.605 3.38 -- -- -0.144 -- -- 0.0337 -- 81.72 330 -- --
170.11 0.609 3.38 -- -- -- -- -- 0.0301 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 149.23 humidity 80.0 30 < th dose independent rect. 1 5
5 149.27 humidity 80.0 30 < th dose dependent rect. 1 6
9 149.71 humidity 80.0 30 < th dose independent rect. 1 3
17 150.04 humidity 80.0 30 < th dose independent rect. 1 1
20 150.04 humidity 80.0 30 < th dose dependent rect. 1 1
59 158.87 atmosphere 1005.0 10 > th dose dependent rect. 1 1
68 159.51 atmosphere 1005.0 90 > th dose dependent rect. 1 1
73 160.04 atmosphere 1005.0 30 > th dose dependent rect. 24 7
88 160.63 wind 3.0 10 < th dose independent rect. 24 3
94 161.02 temperature 20.0 30 < th dose independent rect. 1 1
105 161.18 atmosphere 1005.0 90 > th dose independent rect. 24 3
108 161.25 humidity 80.0 1440 > th dose independent rect. 24 2
119 161.42 radiation 1.0 14400 < th dose dependent rect. 1 3
122 161.49 radiation 1.0 90 < th dose dependent rect. 3 21
144 161.75 precipitation 0.1 720 < th dose independent rect. 24 17
145 161.75 precipitation 0.1 720 < th dose dependent rect. 24 17
154 161.93 precipitation 0.1 720 < th dose independent rect. 5 7
155 161.93 precipitation 0.1 720 < th dose dependent rect. 5 7
157 161.94 precipitation 0.1 720 < th dose independent rect. 17 7
158 161.94 precipitation 0.1 720 < th dose dependent rect. 17 7
159 161.96 radiation 10.0 720 < th dose independent rect. 17 7
164 162.06 radiation 40.0 720 < th dose dependent rect. 17 7
170 162.15 radiation 1.0 90 < th dose independent rect. 3 21
179 162.22 humidity 50.0 720 > th dose independent rect. 5 7
180 162.23 wind 9.0 720 < th dose independent rect. 5 7
183 162.27 precipitation 0.1 720 < th dose independent rect. 12 17
184 162.27 precipitation 0.1 720 < th dose dependent rect. 12 17
185 162.28 temperature 10.0 720 > th dose independent rect. 17 7
188 162.28 temperature 10.0 720 > th dose independent rect. 24 17
193 162.34 humidity 50.0 720 > th dose independent rect. 17 7
195 162.38 wind 5.0 720 < th dose independent rect. 24 1
196 162.39 temperature 10.0 720 > th dose independent rect. 5 7
197 162.39 atmosphere 995.0 720 > th dose independent rect. 5 7
198 162.39 atmosphere 1015.0 720 < th dose independent rect. 5 7
199 162.39 temperature 10.0 720 > th dose independent rect. 12 17
207 162.49 wind 9.0 30 < th dose dependent rect. 24 12
208 162.51 humidity 90.0 90 < th dose independent rect. 24 19
209 162.53 humidity 50.0 90 > th dose dependent rect. 19 16
212 162.54 humidity 50.0 10 > th dose dependent rect. 20 15
214 162.56 humidity 90.0 10 < th dose dependent rect. 16 15
216 162.57 wind 3.0 10 < th dose independent rect. 24 8
219 162.59 temperature 15.0 720 > th dose independent rect. 24 1
220 162.59 atmosphere 995.0 720 > th dose independent rect. 24 17
223 162.65 atmosphere 1005.0 90 > th dose independent rect. 24 7
224 162.66 temperature 30.0 30 < th dose independent rect. 3 21
227 162.69 wind 1.0 10 > th dose independent rect. 12 12
228 162.70 atmosphere 995.0 720 > th dose independent rect. 17 7
231 162.73 wind 7.0 10 < th dose dependent rect. 24 3
264 162.94 temperature 20.0 10 < th dose independent rect. 1 5
275 162.98 temperature 25.0 10 < th dose dependent rect. 2 1
278 163.00 temperature 10.0 1440 > th dose independent rect. 1 3
281 163.00 temperature 30.0 1440 < th dose independent rect. 1 3
285 163.00 humidity 50.0 1440 > th dose independent rect. 1 3
294 163.00 atmosphere 995.0 1440 > th dose independent rect. 1 3
295 163.00 radiation 1.0 1440 < th dose independent rect. 1 3
315 163.00 humidity 90.0 270 < th dose independent rect. 22 20
316 163.00 temperature 10.0 1440 > th dose independent rect. 4 21
327 163.01 radiation 10.0 30 > th dose independent rect. 16 15
328 163.01 temperature 10.0 720 > th dose dependent rect. 24 1
330 163.01 temperature 30.0 10 < th dose dependent rect. 24 3
334 163.03 radiation 40.0 10 < th dose independent rect. 11 9
341 163.07 temperature 20.0 10 < th dose independent rect. 1 7
344 163.07 radiation 40.0 30 < th dose independent rect. 11 16
346 163.08 atmosphere 1000.0 30 > th dose independent rect. 3 21
359 163.13 wind 9.0 1440 < th dose independent rect. 1 3
365 163.15 precipitation 0.1 10 < th dose independent rect. 24 12
367 163.15 precipitation 0.1 10 < th dose dependent rect. 24 12
373 163.18 atmosphere 995.0 720 > th dose independent rect. 12 17
374 163.19 wind 9.0 10 < th dose independent rect. 12 12
375 163.19 wind 9.0 10 < th dose independent rect. 24 12
376 163.20 humidity 50.0 10 > th dose independent rect. 24 12
388 163.26 humidity 50.0 270 > th dose dependent rect. 17 21
390 163.27 humidity 50.0 720 > th dose independent rect. 12 1
397 163.28 atmosphere 1000.0 720 > th dose independent rect. 21 8
400 163.29 wind 1.0 720 > th dose independent rect. 24 1
403 163.30 temperature 30.0 10 > th dose independent rect. 11 1
415 163.34 temperature 15.0 720 > th dose independent rect. 12 1
426 163.37 temperature 10.0 30 > th dose dependent rect. 24 12
433 163.39 temperature 30.0 90 < th dose independent rect. 3 12
440 163.40 wind 3.0 90 > th dose independent rect. 20 14
443 163.41 radiation 10.0 1440 > th dose independent rect. 9 1
447 163.41 humidity 90.0 10 < th dose dependent rect. 16 12
449 163.42 precipitation 0.1 10 < th dose independent rect. 12 12
452 163.42 precipitation 0.1 10 < th dose dependent rect. 12 12
454 163.43 wind 1.0 90 > th dose independent rect. 24 3
455 163.43 temperature 10.0 10 > th dose independent rect. 12 12
456 163.43 temperature 10.0 10 > th dose independent rect. 24 12
457 163.43 atmosphere 995.0 10 > th dose independent rect. 24 12
465 163.45 precipitation 0.1 10 < th dose independent rect. 24 3
467 163.45 precipitation 0.1 10 < th dose dependent rect. 24 3
472 163.46 temperature 30.0 720 < th dose independent rect. 24 1
473 163.46 humidity 50.0 720 > th dose independent rect. 24 1
476 163.46 atmosphere 995.0 720 > th dose independent rect. 24 1
477 163.46 radiation 1.0 720 < th dose independent rect. 24 1
482 163.46 precipitation 0.1 720 < th dose independent rect. 12 1
483 163.46 precipitation 0.1 720 < th dose independent rect. 24 1
488 163.46 temperature 10.0 720 > th dose independent rect. 1 23
489 163.46 radiation 1.0 720 < th dose dependent rect. 24 1
494 163.46 precipitation 0.1 720 < th dose dependent rect. 12 1
495 163.46 precipitation 0.1 720 < th dose dependent rect. 24 1
502 163.48 wind 9.0 720 < th dose independent rect. 12 1
505 163.48 atmosphere 1015.0 30 < th dose independent rect. 24 12
509 163.49 temperature 10.0 1440 > th dose independent rect. 1 12
512 163.49 temperature 10.0 1440 > th dose independent rect. 13 12
515 163.49 atmosphere 995.0 1440 > th dose independent rect. 1 12
517 163.49 humidity 50.0 30 > th dose dependent rect. 3 21
524 163.51 atmosphere 995.0 720 > th dose independent rect. 12 1
525 163.51 atmosphere 1015.0 720 < th dose independent rect. 12 1
526 163.51 temperature 10.0 720 > th dose independent rect. 13 23
539 163.53 precipitation 0.1 720 < th dose independent rect. 13 23
541 163.53 precipitation 0.1 720 < th dose dependent rect. 13 23
543 163.54 humidity 80.0 90 > th dose independent rect. 7 17
551 163.56 temperature 10.0 30 > th dose independent rect. 24 3
552 163.56 temperature 30.0 30 < th dose independent rect. 24 3
553 163.56 humidity 50.0 30 > th dose independent rect. 24 3
557 163.56 radiation 1.0 30 < th dose independent rect. 24 3
563 163.56 temperature 10.0 30 > th dose independent rect. 3 21
564 163.56 radiation 1.0 30 < th dose dependent rect. 24 3
571 163.57 atmosphere 1015.0 30 < th dose independent rect. 24 3
580 163.59 wind 1.0 10 > th dose dependent rect. 20 15
597 163.61 atmosphere 1010.0 30 < th dose independent rect. 12 12
598 163.61 precipitation 0.1 30 < th dose independent rect. 3 21
602 163.61 precipitation 0.1 30 < th dose dependent rect. 3 21
607 163.62 temperature 20.0 30 > th dose dependent rect. 11 1
609 163.63 wind 1.0 720 > th dose independent rect. 12 1
615 163.63 humidity 70.0 90 > th dose dependent rect. 7 22
620 163.64 atmosphere 1000.0 10 > th dose independent rect. 12 12
647 163.67 wind 9.0 720 < th dose independent rect. 17 7
653 163.68 radiation 10.0 43200 < th dose dependent rect. 20 5
654 163.68 radiation 10.0 30 > th dose dependent rect. 17 14
656 163.68 humidity 90.0 270 < th dose dependent rect. 21 21
668 163.71 wind 3.0 10 > th dose independent rect. 20 15
669 163.71 humidity 80.0 90 > th dose independent rect. 3 21
673 163.71 wind 3.0 90 < th dose dependent rect. 5 23
683 163.73 wind 9.0 30 < th dose independent rect. 3 21
691 163.74 wind 9.0 720 < th dose independent rect. 24 17
745 163.82 precipitation 0.1 720 < th dose independent rect. 24 9
746 163.82 wind 3.0 10 < th dose independent rect. 24 13
749 163.82 precipitation 0.1 720 < th dose dependent rect. 24 9
773 163.83 humidity 50.0 90 > th dose dependent rect. 7 17
781 163.84 precipitation 0.1 720 < th dose independent rect. 1 23
785 163.84 humidity 70.0 270 > th dose dependent rect. 5 23
786 163.84 precipitation 0.1 720 < th dose dependent rect. 1 23
800 163.87 wind 1.0 90 > th dose independent rect. 3 21
809 163.88 humidity 60.0 10 > th dose independent rect. 20 15
819 163.89 radiation 10.0 10 > th dose independent rect. 6 1
849 163.89 radiation 10.0 10 > th dose dependent rect. 6 1
888 163.91 atmosphere 1015.0 720 < th dose independent rect. 24 1
899 163.93 humidity 90.0 720 < th dose independent rect. 12 1
901 163.93 atmosphere 995.0 720 > th dose independent rect. 13 23
944 163.98 wind 1.0 1440 > th dose independent rect. 9 1
946 163.98 wind 1.0 10 > th dose independent rect. 3 21
960 163.99 atmosphere 995.0 720 > th dose independent rect. 1 23
964 164.00 wind 1.0 720 > th dose independent rect. 17 7
999 164.03 humidity 80.0 1440 < th dose independent rect. 10 2