BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0773100 Os03g0773100|AK065113
         (157 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0773100  Similar to Myb/SANT domain protein                  326   5e-90
Os03g0241100  Myb, DNA-binding domain containing protein          210   3e-55

>Os03g0773100 Similar to Myb/SANT domain protein
          Length = 157

 Score =  326 bits (835), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   MPQVRPASAEKPTRQWAAWTRQEEQSFFNALRLEGKNFEKITLRVQSKNKDQVRHYYYRL 60
           MPQVRPASAEKPTRQWAAWTRQEEQSFFNALRLEGKNFEKITLRVQSKNKDQVRHYYYRL
Sbjct: 1   MPQVRPASAEKPTRQWAAWTRQEEQSFFNALRLEGKNFEKITLRVQSKNKDQVRHYYYRL 60

Query: 61  VRRMKKLLGPEFSLDAKNSKDTVAAMLRWWSLLEKFSCSASKLHLKPRRFKTFVEALVHD 120
           VRRMKKLLGPEFSLDAKNSKDTVAAMLRWWSLLEKFSCSASKLHLKPRRFKTFVEALVHD
Sbjct: 61  VRRMKKLLGPEFSLDAKNSKDTVAAMLRWWSLLEKFSCSASKLHLKPRRFKTFVEALVHD 120

Query: 121 HLLLSHSFVTVKMFIFVFFFSCDISNFIGKSTAKGQE 157
           HLLLSHSFVTVKMFIFVFFFSCDISNFIGKSTAKGQE
Sbjct: 121 HLLLSHSFVTVKMFIFVFFFSCDISNFIGKSTAKGQE 157



>Os03g0241100 Myb, DNA-binding domain containing protein
          Length = 719

 Score =  210 bits (535), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 99/106 (93%), Positives = 102/106 (96%)

Query: 12  PTRQWAAWTRQEEQSFFNALRLEGKNFEKITLRVQSKNKDQVRHYYYRLVRRMKKLLGPE 71
           P RQWAAWTRQEEQ+FFNALR  GKNFEKITLRVQSK+KDQVRHYYYRLVRRMKKLLGPE
Sbjct: 8   PARQWAAWTRQEEQNFFNALRQVGKNFEKITLRVQSKSKDQVRHYYYRLVRRMKKLLGPE 67

Query: 72  FSLDAKNSKDTVAAMLRWWSLLEKFSCSASKLHLKPRRFKTFVEAL 117
           FSLDAKNSKDT+AAML WWSLLEKFSCSASKLHLKPRRFKTFVEAL
Sbjct: 68  FSLDAKNSKDTIAAMLCWWSLLEKFSCSASKLHLKPRRFKTFVEAL 113



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,898,883
Number of extensions: 167185
Number of successful extensions: 530
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 530
Number of HSP's successfully gapped: 2
Length of query: 157
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 65
Effective length of database: 12,232,113
Effective search space: 795087345
Effective search space used: 795087345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 152 (63.2 bits)