BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0769700 Os03g0769700|AK063727
         (155 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0769700  Conserved hypothetical protein                      234   2e-62
Os07g0123800  Conserved hypothetical protein                       88   2e-18

>Os03g0769700 Conserved hypothetical protein
          Length = 155

 Score =  234 bits (597), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 119/142 (83%), Positives = 119/142 (83%)

Query: 14  APARALGRARDMYVRGMTGCARCVPADAAFGYPVFVPSSAAASMRSNSFGSDSRFGGGAD 73
           APARALGRARDMYVRGMTGCARCVPADAAFGYPVFVPSSAAASMRSNSFGSDSRFGGGAD
Sbjct: 14  APARALGRARDMYVRGMTGCARCVPADAAFGYPVFVPSSAAASMRSNSFGSDSRFGGGAD 73

Query: 74  DDLRELIXXXXXXXXXXXXXXXXXXXXXXXMASGISMARIDEDAPCEEFGDAGVMHYPRS 133
           DDLRELI                       MASGISMARIDEDAPCEEFGDAGVMHYPRS
Sbjct: 74  DDLRELIRAASQRRAAEQEREARAVARSQSMASGISMARIDEDAPCEEFGDAGVMHYPRS 133

Query: 134 QSCVGGVGGRIAHCHRKVAALA 155
           QSCVGGVGGRIAHCHRKVAALA
Sbjct: 134 QSCVGGVGGRIAHCHRKVAALA 155



>Os07g0123800 Conserved hypothetical protein
          Length = 161

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/127 (46%), Positives = 72/127 (56%), Gaps = 8/127 (6%)

Query: 14  APARALGRARDMYVRGMTGCARCVPADAAF--GYPVFVPSSAAASMRSNSFGSDSRF--G 69
           AP RAL RARD YVR +TGCA  +P DAAF  GYP F   +     R++SF S SR+  G
Sbjct: 21  APRRALCRARDFYVRSITGCAGHLPPDAAFGYGYPTFAAPTTPTMSRNSSFAS-SRYSAG 79

Query: 70  GGADDDLRELIXXXXXXXXXXXXXXXXXXXXXXXMASGISMARIDEDAPCEEFGDAGVMH 129
           GG DDD+REL+                         S ++MARIDED PC EF   G++ 
Sbjct: 80  GGGDDDMRELVRAASQRLAAERAAAAAEPATVPRSQS-VAMARIDEDRPC-EFAGVGLV- 136

Query: 130 YPRSQSC 136
           +PRSQSC
Sbjct: 137 FPRSQSC 143



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,648,294
Number of extensions: 165721
Number of successful extensions: 510
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 507
Number of HSP's successfully gapped: 2
Length of query: 155
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 63
Effective length of database: 12,232,113
Effective search space: 770623119
Effective search space used: 770623119
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 151 (62.8 bits)