Os03g0769700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0769700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 270.75 | 0.773 | 8.91 | -2.8 | 5.05 | 2.73 | -1.74 | -0.394 | -1.17 | 21.8 | 19.72 | 261 | 23 | 9.98 |
| 270.68 | 0.766 | 8.92 | -2.75 | 5.14 | 2.79 | -1.8 | -- | -1.15 | 21.8 | 19.1 | 260 | 23 | 9.98 |
| 281.05 | 0.781 | 8.89 | -2.58 | 5.1 | 2.72 | -- | 0.808 | -1.1 | 21.8 | 19.43 | 259 | 23.1 | 9.97 |
| 281.47 | 0.781 | 8.9 | -2.69 | 5.2 | 2.78 | -- | -- | -1.14 | 21.8 | 18.71 | 266 | 23 | 10 |
| 1380.21 | 1.73 | 8.63 | -2.85 | -- | 1.94 | -- | -0.264 | -0.804 | -- | 27.99 | 5447 | 1.47 | 9.87 |
| 384.34 | 0.919 | 8.76 | -2.37 | 4.22 | -- | -1.26 | -- | -0.682 | 23.1 | -- | -- | -- | -- |
| 391.11 | 0.926 | 8.75 | -2.32 | 4.23 | -- | -- | -- | -0.679 | 23.2 | -- | -- | -- | -- |
| 1153.48 | 1.59 | 8.58 | -1.83 | -- | -3.9 | -- | -- | -0.315 | -- | 23.56 | 1051 | 1.52 | 15.1 |
| 463.27 | 1 | 8.81 | -- | 4.76 | 2.04 | -- | -- | -0.751 | 22.1 | 20.3 | 233 | 23 | 10 |
| 1508.04 | 1.81 | 8.65 | -2.22 | -- | -- | -- | -- | -0.642 | -- | -- | -- | -- | -- |
| 533.15 | 1.08 | 8.69 | -- | 4.21 | -- | -- | -- | -0.42 | 23.1 | -- | -- | -- | -- |
| 1240.74 | 1.65 | 8.53 | -- | -- | -4.1 | -- | -- | -0.0972 | -- | 23.56 | 1051 | 1.52 | 15.1 |
| 1637.99 | 1.89 | 8.59 | -- | -- | -- | -- | -- | -0.395 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 271.39 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 10 |
| 7 | 282.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 6 |
| 17 | 290.49 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 31 | 292.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 41 | 294.25 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 56 | 294.51 | temperature | 30 | 4320 | < th | dose independent | rect. | 21 | 13 |
| 60 | 294.87 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 9 |
| 66 | 295.00 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 6 |
| 67 | 295.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 11 |
| 73 | 295.19 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 4 |
| 75 | 295.23 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 147 | 297.66 | temperature | 10 | 720 | > th | dose dependent | sin | 12 | NA |
| 150 | 297.75 | temperature | 15 | 30 | > th | dose dependent | sin | 8 | NA |
| 154 | 297.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 159 | 298.24 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 160 | 298.27 | temperature | 20 | 720 | > th | dose dependent | sin | 11 | NA |
| 215 | 299.67 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 308 | 301.24 | temperature | 25 | 4320 | > th | dose dependent | sin | 6 | NA |
| 311 | 301.27 | temperature | 30 | 4320 | > th | dose independent | sin | 10 | NA |
| 314 | 301.33 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 21 |
| 316 | 301.35 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 21 |
| 321 | 301.36 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 16 |
| 325 | 301.39 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 14 |
| 387 | 301.71 | temperature | 30 | 4320 | < th | dose independent | sin | 10 | NA |
| 514 | 302.42 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 23 |
| 531 | 302.50 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 613 | 302.76 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 629 | 302.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 688 | 303.21 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 22 |
| 739 | 303.53 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 742 | 303.57 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 22 |
| 761 | 303.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 779 | 303.81 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 8 |
| 817 | 303.99 | temperature | 30 | 4320 | < th | dose independent | rect. | 21 | 19 |
| 818 | 304.01 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 17 |
| 824 | 304.03 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 14 |
| 830 | 304.04 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 12 |
| 835 | 304.06 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 8 |
| 837 | 304.06 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 10 |