Os07g0123800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0123800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 482.19 | 1.03 | 8.35 | 3.28 | 2.82 | -2.53 | -0.211 | 0.819 | 1.38 | 22.1 | 25.67 | 1358 | -- | -- |
| 482.56 | 1.02 | 8.37 | 3.09 | 2.81 | -2.4 | -0.235 | -- | 1.35 | 22.1 | 25.7 | 1366 | -- | -- |
| 482.35 | 1.02 | 8.35 | 3.28 | 2.82 | -2.53 | -- | 0.808 | 1.37 | 22.1 | 25.7 | 1357 | -- | -- |
| 482.53 | 1.02 | 8.38 | 3.07 | 2.81 | -2.43 | -- | -- | 1.31 | 22.1 | 25.78 | 1361 | -- | -- |
| 943.59 | 1.43 | 8.27 | 3.38 | -- | -2.34 | -- | 1.22 | 1.39 | -- | 25.76 | 1475 | -- | -- |
| 737.82 | 1.27 | 8.42 | 2.22 | 2.66 | -- | -0.352 | -- | 1.12 | 21.8 | -- | -- | -- | -- |
| 738.29 | 1.27 | 8.42 | 2.23 | 2.67 | -- | -- | -- | 1.12 | 21.7 | -- | -- | -- | -- |
| 943.09 | 1.43 | 8.3 | 3.06 | -- | -2.24 | -- | -- | 1.32 | -- | 25.7 | 1480 | -- | -- |
| 709.11 | 1.24 | 8.52 | -- | 2.73 | -1.77 | -- | -- | 0.862 | 21.9 | 28.04 | 1351 | -- | -- |
| 1161.75 | 1.59 | 8.35 | 2.26 | -- | -- | -- | -- | 1.12 | -- | -- | -- | -- | -- |
| 869.35 | 1.38 | 8.48 | -- | 2.67 | -- | -- | -- | 0.87 | 21.8 | -- | -- | -- | -- |
| 1164.9 | 1.59 | 8.44 | -- | -- | -1.65 | -- | -- | 0.734 | -- | 27.8 | 1475 | -- | -- |
| 1295.91 | 1.68 | 8.41 | -- | -- | -- | -- | -- | 0.866 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 483.88 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 5 | 485.37 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 16 |
| 17 | 485.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 41 | 486.40 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 86 | 486.96 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 90 | 487.00 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 115 | 487.43 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 130 | 487.62 | humidity | 80 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 200 | 488.68 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 298 | 490.50 | humidity | 50 | 1440 | > th | dose dependent | rect. | 8 | 11 |
| 310 | 490.67 | humidity | 80 | 1440 | < th | dose dependent | sin | 21 | NA |
| 314 | 490.80 | humidity | 50 | 1440 | > th | dose dependent | rect. | 8 | 13 |
| 362 | 491.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 369 | 491.76 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 425 | 492.82 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 478 | 493.83 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 504 | 494.45 | humidity | 80 | 1440 | < th | dose dependent | rect. | 10 | 23 |
| 514 | 494.70 | humidity | 50 | 1440 | > th | dose dependent | sin | 22 | NA |
| 549 | 495.70 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 551 | 495.80 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 578 | 496.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 579 | 496.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 584 | 496.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 607 | 497.18 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 636 | 497.83 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 637 | 497.83 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 638 | 497.83 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 656 | 497.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 8 |
| 659 | 497.94 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 19 |
| 664 | 497.96 | temperature | 30 | 1440 | < th | dose independent | sin | 17 | NA |
| 666 | 497.96 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 16 |
| 732 | 498.93 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 767 | 499.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 773 | 499.34 | humidity | 60 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 782 | 499.48 | temperature | 30 | 1440 | > th | dose independent | sin | 16 | NA |
| 805 | 499.71 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 829 | 499.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 879 | 500.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 950 | 501.17 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 975 | 501.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 19 |