BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0769100 Os03g0769100|AK068283
         (223 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0769100  Similar to 9S ribosomal protein                     316   7e-87
Os07g0658200  Similar to 30S ribosomal protein S9                  67   9e-12

>Os03g0769100 Similar to 9S ribosomal protein
          Length = 223

 Score =  316 bits (810), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 164/223 (73%), Positives = 164/223 (73%)

Query: 1   MALSLTTAFSHLSLPSTSKFHPLPLLHLRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MALSLTTAFSHLSLPSTSKFHPLPLLHLRF                              
Sbjct: 1   MALSLTTAFSHLSLPSTSKFHPLPLLHLRFPSSSSSRRAARLALAASAAEAAEPVEVEEA 60

Query: 61  XXXXXXXXXXXXXXXXXGPALRKYVKQRLPGGFAAQRITATGRRKTAIARVVLQEGTGRV 120
                            GPALRKYVKQRLPGGFAAQRITATGRRKTAIARVVLQEGTGRV
Sbjct: 61  PAEDGADEVVAVEDELSGPALRKYVKQRLPGGFAAQRITATGRRKTAIARVVLQEGTGRV 120

Query: 121 FINFRDAKEYLQGNPMWMEYCKVPLVTLGFENSYDVFVKVHGGGLSGQAQAICLGVARAL 180
           FINFRDAKEYLQGNPMWMEYCKVPLVTLGFENSYDVFVKVHGGGLSGQAQAICLGVARAL
Sbjct: 121 FINFRDAKEYLQGNPMWMEYCKVPLVTLGFENSYDVFVKVHGGGLSGQAQAICLGVARAL 180

Query: 181 VKISTANKVTLRGEGLLTRDTRIVEXXXXXXXXXXXXPQFSKR 223
           VKISTANKVTLRGEGLLTRDTRIVE            PQFSKR
Sbjct: 181 VKISTANKVTLRGEGLLTRDTRIVERKKAGLKKARKRPQFSKR 223



>Os07g0658200 Similar to 30S ribosomal protein S9
          Length = 209

 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 61/129 (47%), Gaps = 5/129 (3%)

Query: 97  RITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEYCKV--PLVTLGFENSY 154
           R   TG+RK +IARV +Q G G+  +N +    Y    P+      +  P         +
Sbjct: 84  RAYGTGKRKCSIARVWIQPGDGKFIVNDKQFDSYF---PILDHRADLLRPFTVTKTLGRW 140

Query: 155 DVFVKVHGGGLSGQAQAICLGVARALVKISTANKVTLRGEGLLTRDTRIVEXXXXXXXXX 214
           DV   V GGG+SGQ  AI LG++RAL       +  L+  G LTRD+R+VE         
Sbjct: 141 DVTCTVKGGGVSGQVGAIRLGISRALQNWEPGLRPNLKAAGYLTRDSRVVERKKPGKAKA 200

Query: 215 XXXPQFSKR 223
               Q+ KR
Sbjct: 201 RKSFQWVKR 209



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,268,229
Number of extensions: 180724
Number of successful extensions: 455
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 2
Length of query: 223
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 126
Effective length of database: 11,971,043
Effective search space: 1508351418
Effective search space used: 1508351418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 154 (63.9 bits)