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Os07g0658200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 30S ribosomal protein S9.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.03 (0.0224) R2 : 0.526
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.28 (0.0575) R2dC : 0.514 R2C : 0.515
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.137 (0.0471) R2dN8 : 0.0114 R2N8 : 0.0118
σ : 0.422
deviance : 81.55
__
_____
C
peak time of C : 16.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
59.26 0.362 9.11 0.0999 1.23 -0.0837 0.319 -3.82 -0.168 16.4 31.97 1167 -- --
60.58 0.362 9.06 0.655 1.22 -0.464 0.175 -- -0.155 16.2 32.13 1158 -- --
59.53 0.359 9.11 0.0969 1.23 -0.0814 -- -3.88 -0.166 16.4 32.02 1159 -- --
60.07 0.361 9.04 0.71 1.24 -0.518 -- -- -0.165 16.4 32.1 1159 -- --
139.15 0.549 9.13 -0.105 -- -0.0991 -- -5.11 -0.23 -- 31.89 1185 -- --
72.42 0.399 9.02 0.566 1.29 -- 0.445 -- -0.076 16.3 -- -- -- --
72.97 0.4 9.02 0.571 1.29 -- -- -- -0.0736 16.2 -- -- -- --
140.67 0.552 9.04 0.685 -- -0.668 -- -- -0.223 -- 31.91 1172 -- --
72.22 0.396 9.05 -- 1.24 -0.438 -- -- -0.234 16.4 32.92 1131 -- --
162.7 0.596 9.01 0.519 -- -- -- -- -0.108 -- -- -- -- --
81.55 0.422 9.03 -- 1.28 -- -- -- -0.137 16.3 -- -- -- --
152.56 0.575 9.05 -- -- -0.585 -- -- -0.277 -- 33 1138 -- --
169.81 0.608 9.02 -- -- -- -- -- -0.165 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 54.42 wind 5.0 270 < th dose independent rect. 1 6
2 54.64 wind 5.0 270 < th dose independent rect. 3 2
3 54.91 wind 5.0 90 < th dose independent rect. 3 5
4 55.09 wind 7.0 90 < th dose dependent rect. 3 5
5 55.10 temperature 10.0 270 > th dose dependent rect. 1 6
7 55.14 temperature 10.0 90 > th dose dependent rect. 3 5
8 55.15 temperature 10.0 270 > th dose dependent rect. 3 2
11 55.35 wind 9.0 270 < th dose dependent rect. 1 6
12 55.37 precipitation 0.1 270 < th dose independent rect. 3 2
13 55.37 precipitation 0.1 270 < th dose dependent rect. 3 2
15 55.44 wind 9.0 270 < th dose dependent rect. 3 2
17 55.48 temperature 10.0 270 > th dose dependent rect. 13 17
25 55.66 wind 7.0 10 < th dose dependent rect. 4 5
30 55.78 precipitation 0.1 90 < th dose independent rect. 3 5
31 55.78 precipitation 0.1 90 < th dose dependent rect. 3 5
35 55.83 wind 9.0 270 < th dose independent rect. 5 22
42 55.93 precipitation 0.1 270 < th dose independent rect. 1 6
44 55.93 precipitation 0.1 270 < th dose dependent rect. 1 6
52 56.02 temperature 10.0 270 > th dose independent rect. 3 2
54 56.02 temperature 30.0 270 < th dose independent rect. 3 2
55 56.02 humidity 50.0 270 > th dose independent rect. 3 2
58 56.02 atmosphere 995.0 270 > th dose independent rect. 3 2
59 56.02 atmosphere 1010.0 270 < th dose independent rect. 3 2
61 56.02 radiation 20.0 270 < th dose independent rect. 3 2
64 56.02 temperature 10.0 270 > th dose independent rect. 5 22
65 56.03 radiation 40.0 270 < th dose dependent rect. 3 2
66 56.04 radiation 20.0 270 < th dose dependent rect. 3 2
69 56.07 radiation 1.0 270 < th dose independent rect. 3 2
72 56.07 humidity 50.0 270 > th dose independent rect. 7 18
73 56.07 humidity 50.0 270 > th dose dependent rect. 3 2
74 56.07 radiation 1.0 270 < th dose dependent rect. 3 2
78 56.10 temperature 10.0 90 > th dose independent rect. 3 5
80 56.10 temperature 30.0 90 < th dose independent rect. 3 5
81 56.10 humidity 50.0 90 > th dose independent rect. 3 5
83 56.10 atmosphere 995.0 90 > th dose independent rect. 3 5
84 56.10 atmosphere 1015.0 90 < th dose independent rect. 3 5
85 56.10 wind 9.0 90 < th dose independent rect. 8 19
86 56.10 temperature 10.0 90 > th dose independent rect. 8 19
89 56.16 radiation 40.0 90 < th dose independent rect. 3 5
96 56.32 humidity 50.0 270 > th dose independent rect. 6 20
106 56.39 temperature 10.0 270 > th dose independent rect. 1 6
108 56.39 temperature 30.0 270 < th dose independent rect. 1 6
109 56.39 humidity 50.0 270 > th dose independent rect. 1 6
111 56.39 atmosphere 995.0 270 > th dose independent rect. 1 6
112 56.39 atmosphere 1015.0 270 < th dose independent rect. 1 6
113 56.39 radiation 30.0 270 < th dose independent rect. 1 6
120 56.42 precipitation 0.1 90 < th dose independent rect. 8 19
123 56.42 precipitation 0.1 90 < th dose dependent rect. 8 19
127 56.44 radiation 40.0 270 < th dose dependent rect. 1 6
139 56.52 temperature 10.0 10 > th dose dependent rect. 14 18
143 56.57 wind 5.0 10 < th dose independent rect. 4 5
153 56.66 temperature 10.0 10 > th dose dependent rect. 4 4
167 56.75 wind 9.0 270 < th dose independent rect. 6 20
177 56.84 precipitation 0.1 270 < th dose independent rect. 14 16
178 56.84 precipitation 0.1 270 < th dose dependent rect. 14 16
184 56.88 humidity 50.0 270 > th dose dependent rect. 1 6
205 56.93 precipitation 0.1 10 < th dose independent rect. 4 5
206 56.93 temperature 10.0 270 > th dose independent rect. 6 20
208 56.93 precipitation 0.1 10 < th dose dependent rect. 4 5
213 56.94 atmosphere 995.0 90 > th dose independent rect. 8 19
220 56.99 precipitation 0.1 270 < th dose independent rect. 2 16
222 56.99 precipitation 0.1 270 < th dose dependent rect. 2 16
233 57.03 temperature 10.0 10 > th dose independent rect. 4 5
235 57.03 temperature 30.0 10 < th dose independent rect. 4 5
236 57.03 humidity 50.0 10 > th dose independent rect. 4 5
238 57.03 atmosphere 995.0 10 > th dose independent rect. 4 5
239 57.03 atmosphere 1015.0 10 < th dose independent rect. 4 5
241 57.03 temperature 10.0 10 > th dose independent rect. 9 19
254 57.04 wind 9.0 10 < th dose independent rect. 9 19
257 57.05 temperature 15.0 270 > th dose independent rect. 14 16
261 57.06 humidity 50.0 270 > th dose dependent rect. 2 4
283 57.17 radiation 1.0 270 < th dose independent rect. 18 8
286 57.17 radiation 1.0 270 < th dose dependent rect. 18 8
307 57.22 humidity 50.0 270 > th dose independent rect. 6 8
310 57.23 temperature 30.0 270 < th dose independent rect. 18 8
330 57.25 atmosphere 1010.0 270 < th dose independent rect. 13 17
342 57.27 radiation 40.0 10 < th dose independent rect. 4 4
343 57.27 humidity 60.0 270 > th dose independent rect. 18 8
387 57.36 precipitation 0.1 270 < th dose independent rect. 6 8
389 57.36 precipitation 0.1 270 < th dose dependent rect. 6 8
404 57.42 wind 9.0 270 < th dose independent rect. 6 8
408 57.43 temperature 10.0 270 > th dose independent rect. 6 8
409 57.43 atmosphere 995.0 270 > th dose independent rect. 6 8
410 57.43 atmosphere 1015.0 270 < th dose independent rect. 6 8
415 57.44 radiation 1.0 270 < th dose dependent rect. 12 14
442 57.48 atmosphere 1000.0 270 > th dose independent rect. 19 7
443 57.48 atmosphere 995.0 270 > th dose dependent rect. 18 8
505 57.58 humidity 50.0 270 > th dose dependent rect. 18 8
509 57.59 wind 9.0 270 < th dose independent rect. 18 8
518 57.61 temperature 10.0 270 > th dose independent rect. 18 8
523 57.61 temperature 10.0 270 > th dose independent rect. 2 16
524 57.61 atmosphere 1015.0 270 < th dose independent rect. 2 16
528 57.63 atmosphere 995.0 10 > th dose independent rect. 9 19
533 57.63 radiation 1.0 270 < th dose dependent rect. 5 21
543 57.68 temperature 30.0 10 < th dose dependent rect. 20 8
580 57.77 wind 9.0 270 < th dose independent rect. 14 16
608 57.86 temperature 30.0 270 < th dose dependent rect. 19 7
610 57.87 precipitation 0.1 270 < th dose independent rect. 6 20
615 57.87 precipitation 0.1 270 < th dose dependent rect. 6 20
618 57.88 atmosphere 995.0 270 > th dose independent rect. 6 20
627 57.91 radiation 1.0 270 < th dose independent rect. 12 14
657 57.98 wind 9.0 270 < th dose independent rect. 2 16
662 58.00 atmosphere 995.0 10 > th dose dependent rect. 20 8
670 58.03 atmosphere 1010.0 270 < th dose independent rect. 12 9
675 58.05 precipitation 0.1 90 < th dose independent rect. 8 7
680 58.05 precipitation 0.1 90 < th dose dependent rect. 8 7
686 58.06 atmosphere 995.0 90 > th dose dependent rect. 8 19
729 58.14 atmosphere 1000.0 10 > th dose independent rect. 20 8
744 58.16 atmosphere 1015.0 270 < th dose dependent rect. 3 2
750 58.18 temperature 10.0 90 > th dose independent rect. 8 7
751 58.18 atmosphere 1015.0 90 < th dose independent rect. 8 7
752 58.18 precipitation 0.1 270 < th dose independent rect. 18 8
754 58.18 precipitation 0.1 270 < th dose independent rect. 5 22
756 58.18 precipitation 0.1 270 < th dose dependent rect. 18 8
757 58.18 precipitation 0.1 270 < th dose dependent rect. 5 22
815 58.30 atmosphere 995.0 90 > th dose independent rect. 8 7
829 58.32 atmosphere 995.0 10 > th dose dependent rect. 9 19
847 58.36 radiation 40.0 90 < th dose independent rect. 15 17
885 58.43 wind 9.0 90 < th dose independent rect. 8 7
887 58.43 radiation 1.0 270 > th dose independent rect. 6 8