BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0760800 Os03g0760800|AK121316
         (93 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK105729                                                          147   2e-36
Os03g0760800  Similar to GAST1 protein precursor                  144   1e-35
Os10g0115550  Similar to Gibberellin-regulated protein 2 pre...    66   6e-12
Os05g0432200  Similar to Gibberellin-regulated protein 2 pre...    65   8e-12
Os03g0607200  Gibberellin regulated protein family protein         62   7e-11

>AK105729 
          Length = 117

 Score =  147 bits (370), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/93 (80%), Positives = 75/93 (80%)

Query: 1   MKLNXXXXXXXXXXXXXXXXXXQVSMAGSDFCDGKCKVRCSKASRHDDCLKYCGVCCASC 60
           MKLN                  QVSMAGSDFCDGKCKVRCSKASRHDDCLKYCGVCCASC
Sbjct: 25  MKLNTTTTLALLLLLLLASSSLQVSMAGSDFCDGKCKVRCSKASRHDDCLKYCGVCCASC 84

Query: 61  NCVPSGTAGNKDECPCYRDMTTGHGARKRPKCP 93
           NCVPSGTAGNKDECPCYRDMTTGHGARKRPKCP
Sbjct: 85  NCVPSGTAGNKDECPCYRDMTTGHGARKRPKCP 117



>Os03g0760800 Similar to GAST1 protein precursor
          Length = 93

 Score =  144 bits (364), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/93 (80%), Positives = 75/93 (80%)

Query: 1  MKLNXXXXXXXXXXXXXXXXXXQVSMAGSDFCDGKCKVRCSKASRHDDCLKYCGVCCASC 60
          MKLN                  QVSMAGSDFCDGKCKVRCSKASRHDDCLKYCGVCCASC
Sbjct: 1  MKLNTTTTLALLLLLLLASSSLQVSMAGSDFCDGKCKVRCSKASRHDDCLKYCGVCCASC 60

Query: 61 NCVPSGTAGNKDECPCYRDMTTGHGARKRPKCP 93
          NCVPSGTAGNKDECPCYRDMTTGHGARKRPKCP
Sbjct: 61 NCVPSGTAGNKDECPCYRDMTTGHGARKRPKCP 93



>Os10g0115550 Similar to Gibberellin-regulated protein 2 precursor
          Length = 117

 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 34/54 (62%)

Query: 32 CDGKCKVRCSKASRHDDCLKYCGVCCASCNCVPSGTAGNKDECPCYRDMTTGHG 85
          C GKC  RCS  S    C+ YC  CC  C CVPSGT GNK+ECPCY +M T  G
Sbjct: 46 CPGKCSYRCSATSHTTVCMTYCNYCCERCLCVPSGTYGNKEECPCYNNMKTQEG 99



>Os05g0432200 Similar to Gibberellin-regulated protein 2 precursor
          Length = 92

 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 41/62 (66%), Gaps = 3/62 (4%)

Query: 32 CDGKCKVRCSKASRHDDCLKYCGVCCASCNCVPSGTAGNKDECPCYRDMTTGHGARKRPK 91
          C  KC  RCSK+ R   CL+ CG CC  C CVP GT+GN++ CPCY +MTT +G   R K
Sbjct: 34 CGAKCGYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNENVCPCYANMTTHNG---RHK 90

Query: 92 CP 93
          CP
Sbjct: 91 CP 92



>Os03g0607200 Gibberellin regulated protein family protein
          Length = 94

 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 27 AGSDFCDGKCKVRCSKASRHDDCLKY-CGVCCASCNCVPSGTAGNKDECPCYRDMTTGHG 85
          A S FC  KC VRC +           CG+CC  CNCVP+G+   +DECPCYRDM T  G
Sbjct: 28 AASGFCGSKCAVRCGRGRGRGSGCLRSCGLCCEECNCVPTGSGSTRDECPCYRDMLTA-G 86

Query: 86 ARKRPKCP 93
           RKRPKCP
Sbjct: 87 PRKRPKCP 94



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.136    0.488 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,097,447
Number of extensions: 116043
Number of successful extensions: 498
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 494
Number of HSP's successfully gapped: 12
Length of query: 93
Length of database: 17,035,801
Length adjustment: 62
Effective length of query: 31
Effective length of database: 13,798,533
Effective search space: 427754523
Effective search space used: 427754523
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)