Os03g0607200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Gibberellin regulated protein family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0607200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Gibberellin regulated protein family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 378.57 | 0.914 | 8.6 | 4.04 | 1.42 | 3.65 | 1.06 | 0.81 | 0.278 | 8.32 | 29.71 | 1405 | 6.91 | -- |
| 379.7 | 0.908 | 8.6 | 3.96 | 1.43 | 3.69 | 1.09 | -- | 0.279 | 8.29 | 29.72 | 1404 | 6.86 | -- |
| 381.93 | 0.91 | 8.6 | 4.06 | 1.42 | 3.64 | -- | 0.766 | 0.276 | 8.42 | 30 | 1404 | 6.9 | -- |
| 382.95 | 0.911 | 8.6 | 3.97 | 1.42 | 3.7 | -- | -- | 0.271 | 8.4 | 30 | 1404 | 6.86 | -- |
| 490.64 | 1.03 | 8.65 | 4.12 | -- | 3.51 | -- | 0.784 | 0.267 | -- | 30.83 | 1427 | 7 | -- |
| 823.15 | 1.35 | 8.43 | 4.05 | 1.4 | -- | 1.41 | -- | 1.05 | 7.2 | -- | -- | -- | -- |
| 828.26 | 1.35 | 8.43 | 4.09 | 1.4 | -- | -- | -- | 1.05 | 7.35 | -- | -- | -- | -- |
| 492.16 | 1.03 | 8.65 | 4 | -- | 3.54 | -- | -- | 0.252 | -- | 30.2 | 1428 | 6.97 | -- |
| 794.83 | 1.31 | 8.66 | -- | 1.57 | 3.92 | -- | -- | 0.0621 | 8.25 | 30 | 1361 | 6.57 | -- |
| 932.03 | 1.43 | 8.46 | 4.11 | -- | -- | -- | -- | 1.07 | -- | -- | -- | -- | -- |
| 1268.2 | 1.67 | 8.53 | -- | 1.44 | -- | -- | -- | 0.591 | 7.17 | -- | -- | -- | -- |
| 877.65 | 1.38 | 8.71 | -- | -- | 3.75 | -- | -- | 0.019 | -- | 19.99 | 1412 | 6.52 | -- |
| 1377.36 | 1.73 | 8.57 | -- | -- | -- | -- | -- | 0.613 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 381.96 | radiation | 30 | 1440 | > th | dose dependent | sin | 13 | NA |
| 2 | 385.21 | radiation | 30 | 1440 | > th | dose dependent | rect. | 14 | 19 |
| 3 | 385.44 | radiation | 10 | 1440 | > th | dose dependent | rect. | 12 | 21 |
| 9 | 390.95 | radiation | 40 | 1440 | < th | dose dependent | rect. | 13 | 20 |
| 10 | 391.18 | radiation | 20 | 1440 | > th | dose independent | rect. | 12 | 22 |
| 15 | 392.23 | radiation | 30 | 1440 | > th | dose dependent | rect. | 12 | 22 |
| 19 | 392.73 | radiation | 40 | 1440 | > th | dose independent | sin | 13 | NA |
| 27 | 394.16 | radiation | 40 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 30 | 394.74 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 49 | 397.80 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 74 | 399.56 | radiation | 40 | 1440 | < th | dose dependent | sin | 13 | NA |
| 77 | 400.58 | radiation | 1 | 1440 | > th | dose dependent | rect. | 6 | 12 |
| 103 | 401.26 | radiation | 30 | 1440 | > th | dose dependent | rect. | 14 | 3 |
| 132 | 401.58 | radiation | 1 | 1440 | > th | dose dependent | no | NA | NA |
| 181 | 402.01 | radiation | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 308 | 403.31 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 313 | 403.44 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 320 | 403.73 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 326 | 404.26 | radiation | 1 | 1440 | > th | dose dependent | sin | 23 | NA |
| 353 | 405.27 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 355 | 405.45 | radiation | 20 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 382 | 406.20 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 19 |
| 424 | 407.16 | radiation | 40 | 1440 | < th | dose dependent | rect. | 5 | 13 |
| 429 | 407.32 | radiation | 40 | 1440 | < th | dose dependent | rect. | 2 | 16 |
| 430 | 407.33 | radiation | 40 | 1440 | < th | dose dependent | rect. | 21 | 21 |
| 431 | 407.33 | radiation | 40 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 433 | 407.34 | radiation | 40 | 1440 | < th | dose dependent | rect. | 5 | 19 |
| 436 | 407.36 | radiation | 20 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 453 | 407.39 | radiation | 20 | 1440 | > th | dose independent | no | NA | NA |
| 557 | 407.51 | radiation | 40 | 1440 | < th | dose dependent | rect. | 2 | 22 |
| 577 | 407.61 | radiation | 40 | 1440 | < th | dose dependent | no | NA | NA |
| 641 | 408.72 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 645 | 409.22 | radiation | 30 | 1440 | > th | dose dependent | rect. | 12 | 5 |
| 662 | 409.28 | radiation | 40 | 1440 | > th | dose independent | rect. | 14 | 19 |
| 695 | 409.76 | radiation | 40 | 1440 | < th | dose independent | sin | 13 | NA |
| 713 | 409.89 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 714 | 409.89 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 744 | 410.65 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 769 | 410.94 | temperature | 25 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 807 | 411.62 | radiation | 20 | 1440 | > th | dose independent | sin | 4 | NA |
| 943 | 412.87 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 969 | 413.29 | radiation | 40 | 1440 | < th | dose dependent | sin | 0 | NA |
| 990 | 413.70 | radiation | 20 | 1440 | < th | dose independent | rect. | 12 | 21 |