Os03g0760800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GAST1 protein precursor.
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Os03g0760800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GAST1 protein precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1219.85 | 1.64 | 5.95 | -6.01 | 0.623 | 1.61 | 3.26 | 2.41 | -2.27 | 8.88 | 25 | 4283 | 20.6 | 0.375 |
| 1228.37 | 1.63 | 5.94 | -5.34 | 0.691 | 1.7 | 3.27 | -- | -2.21 | 9 | 24.98 | 4282 | 20.6 | 0.334 |
| 1251.02 | 1.65 | 5.95 | -5.87 | 0.631 | 1.59 | -- | 2.31 | -2.23 | 9.87 | 24.9 | 4315 | 20.6 | 0.082 |
| 1258.81 | 1.65 | 5.94 | -5.23 | 0.62 | 1.75 | -- | -- | -2.21 | 9.9 | 25 | 4337 | 20.6 | 0.0704 |
| 1267.38 | 1.66 | 5.95 | -5.96 | -- | 1.66 | -- | 2.66 | -2.23 | -- | 25 | 4160 | 20.7 | 0.0346 |
| 1380.03 | 1.74 | 5.95 | -5.83 | 0.797 | -- | 2.84 | -- | -2.43 | 10.2 | -- | -- | -- | -- |
| 1408.82 | 1.76 | 5.94 | -5.71 | 0.806 | -- | -- | -- | -2.42 | 11.5 | -- | -- | -- | -- |
| 1278.44 | 1.67 | 5.95 | -5.23 | -- | 1.8 | -- | -- | -2.22 | -- | 24.9 | 4278 | 20.7 | 0.0135 |
| 1400.52 | 1.74 | 5.6 | -- | 0.711 | 4.06 | -- | -- | -0.377 | 13.7 | 20.18 | 47520 | 21.6 | 1.1 |
| 1449.56 | 1.78 | 5.96 | -5.73 | -- | -- | -- | -- | -2.42 | -- | -- | -- | -- | -- |
| 2267.34 | 2.23 | 5.8 | -- | 0.872 | -- | -- | -- | -1.78 | 11.9 | -- | -- | -- | -- |
| 1402.67 | 1.74 | 5.53 | -- | -- | 4.37 | -- | -- | -0.488 | -- | 19 | 47520 | 21.2 | 3.57 |
| 2315.27 | 2.25 | 5.82 | -- | -- | -- | -- | -- | -1.79 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1235.29 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 2 | 1238.75 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 8 |
| 12 | 1243.44 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 13 | 1243.44 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 22 | 1245.70 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 24 | 1245.81 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 3 |
| 26 | 1246.23 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 31 | 1246.38 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 33 | 1246.55 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 45 | 1247.47 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 3 |
| 125 | 1249.93 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 157 | 1250.50 | temperature | 25 | 4320 | < th | dose independent | sin | 14 | NA |
| 238 | 1252.39 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 11 |
| 371 | 1255.05 | temperature | 25 | 4320 | > th | dose independent | sin | 14 | NA |
| 396 | 1255.48 | temperature | 25 | 4320 | < th | dose dependent | sin | 13 | NA |
| 557 | 1257.84 | temperature | 10 | 4320 | > th | dose dependent | sin | 12 | NA |
| 983 | 1262.69 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |