BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0760800 Os03g0760800|AK121316
(93 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G39540.1 | chr2:16500866-16501241 FORWARD LENGTH=88 87 1e-18
AT5G59845.1 | chr5:24111443-24111808 FORWARD LENGTH=90 86 4e-18
AT1G10588.1 | chr1:3501276-3501655 FORWARD LENGTH=91 83 3e-17
AT2G14900.1 | chr2:6404210-6405043 FORWARD LENGTH=109 71 1e-13
AT4G09600.1 | chr4:6073014-6073516 REVERSE LENGTH=100 65 5e-12
AT2G18420.1 | chr2:7993861-7994334 FORWARD LENGTH=95 64 2e-11
AT1G74670.1 | chr1:28053378-28053893 FORWARD LENGTH=102 62 5e-11
AT1G22690.1 | chr1:8027328-8027961 FORWARD LENGTH=120 56 3e-09
AT1G75750.1 | chr1:28441813-28442284 REVERSE LENGTH=99 54 1e-08
AT5G15230.1 | chr5:4945017-4946025 FORWARD LENGTH=107 54 2e-08
AT2G30810.1 | chr2:13127945-13128630 REVERSE LENGTH=107 51 1e-07
AT4G09610.1 | chr4:6074927-6075573 REVERSE LENGTH=100 49 4e-07
AT3G02885.1 | chr3:638323-639011 REVERSE LENGTH=98 49 4e-07
AT5G14920.1 | chr5:4826598-4827761 FORWARD LENGTH=276 47 1e-06
>AT2G39540.1 | chr2:16500866-16501241 FORWARD LENGTH=88
Length = 87
Score = 87.4 bits (215), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 45/59 (76%)
Query: 32 CDGKCKVRCSKASRHDDCLKYCGVCCASCNCVPSGTAGNKDECPCYRDMTTGHGARKRP 90
C GKC VRCSKA +H++CLKYC +CC CNCVPSGT G+KDECPCYRDM G K P
Sbjct: 29 CGGKCNVRCSKAGQHEECLKYCNICCQKCNCVPSGTFGHKDECPCYRDMKNSKGGSKCP 87
>AT5G59845.1 | chr5:24111443-24111808 FORWARD LENGTH=90
Length = 89
Score = 85.9 bits (211), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 24 VSMAGSDFCDGKCKVRCSKASRHDDCLKYCGVCCASCN-CVPSGTAGNKDECPCYRDMTT 82
+S A S C GKC VRCSKA R D CLKYC +CC CN CVPSGT GNKDECPCYRDM
Sbjct: 22 LSTADSSPCGGKCNVRCSKAGRQDRCLKYCNICCEKCNYCVPSGTYGNKDECPCYRDMKN 81
Query: 83 GHGARKRP 90
G K P
Sbjct: 82 SKGTSKCP 89
>AT1G10588.1 | chr1:3501276-3501655 FORWARD LENGTH=91
Length = 90
Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 24 VSMAGSDFCDGKCKVRCSKASR-HDDCLKYCGVCCASCNCVPSGTAGNKDECPCYRDMTT 82
+S A S C GKC VRCSKA R H++CL+ C +CC CNCVPSGT GNKDECPCYRDM
Sbjct: 23 LSSADSSACGGKCSVRCSKADRTHEECLEDCDICCQKCNCVPSGTYGNKDECPCYRDMKN 82
Query: 83 GHGARKRP 90
G K P
Sbjct: 83 SKGGSKCP 90
>AT2G14900.1 | chr2:6404210-6405043 FORWARD LENGTH=109
Length = 108
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 27 AGSDFCDGKCKVRCSKASRHDDCLKYCGVCCASCNCVPSGTAGNKDECPCYRDMTTGHGA 86
A +C KC+ RC +A D CLKYCG+CC C CVPSGT GNK EC CYRD + G
Sbjct: 45 ALEKWCGQKCEGRCKEAGMKDRCLKYCGICCKDCQCVPSGTYGNKHECACYRDKLSSKGT 104
Query: 87 RKRPKCP 93
PKCP
Sbjct: 105 ---PKCP 108
>AT4G09600.1 | chr4:6073014-6073516 REVERSE LENGTH=100
Length = 99
Score = 65.5 bits (158), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 32 CDGKCKVRCSKASRHDDCLKYCGVCCASCNCVPSGTAGNKDECPCYRDMTTGHGARKRPK 91
C G+CK RCSK+SR + CL+ C CC CNCVP GTAGN CPCY +TT G R K
Sbjct: 41 CGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGG---RLK 97
Query: 92 CP 93
CP
Sbjct: 98 CP 99
>AT2G18420.1 | chr2:7993861-7994334 FORWARD LENGTH=95
Length = 94
Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 44/62 (70%), Gaps = 3/62 (4%)
Query: 32 CDGKCKVRCSKASRHDDCLKYCGVCCASCNCVPSGTAGNKDECPCYRDMTTGHGARKRPK 91
C+ +C+ RCS +SR + C + CG CCA CNCV GT+GN D+CPCY +TT HG R+ K
Sbjct: 36 CNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKCPCYGSLTT-HGGRR--K 92
Query: 92 CP 93
CP
Sbjct: 93 CP 94
>AT1G74670.1 | chr1:28053378-28053893 FORWARD LENGTH=102
Length = 101
Score = 62.0 bits (149), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 32 CDGKCKVRCSKASRHDDCLKYCGVCCASCNCVPSGTAGNKDECPCYRDMTTGHGARKRPK 91
C G+C RCS H C+ +C CCA C CVP GT GNK CPCY + T G PK
Sbjct: 43 CGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGG---PK 99
Query: 92 CP 93
CP
Sbjct: 100 CP 101
>AT1G22690.1 | chr1:8027328-8027961 FORWARD LENGTH=120
Length = 119
Score = 56.2 bits (134), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 32 CDGKCKVRCSKASRHDDCLKYCGVCCASCNCVPSGTAGNKDECPCYRDMTTGHGARKRPK 91
C C RCSK SR C + CG CCA C CVP GT+GN CPCY + T HG + K
Sbjct: 61 CGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASCPCYASIRT-HG--NKLK 117
Query: 92 CP 93
CP
Sbjct: 118 CP 119
>AT1G75750.1 | chr1:28441813-28442284 REVERSE LENGTH=99
Length = 98
Score = 54.3 bits (129), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 32 CDGKCKVRCSKASRHDDCLKYCGVCCASCNCVPSGTAGNKDECPCYRDMTTGHGARKRPK 91
C C RC + R C + CG CC CNCVP GT GN D+C CY +TT HG R+ K
Sbjct: 40 CGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTT-HGGRR--K 96
Query: 92 CP 93
CP
Sbjct: 97 CP 98
>AT5G15230.1 | chr5:4945017-4946025 FORWARD LENGTH=107
Length = 106
Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 32 CDGKCKVRCSKASRHDDCLKYCGVCCASCNCVPSGTAGNKDECPCYRDMTTGHGARKRPK 91
C +C RC K H C+ +C CC C CVP G GNK C CY + T G PK
Sbjct: 48 CPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGG---PK 104
Query: 92 CP 93
CP
Sbjct: 105 CP 106
>AT2G30810.1 | chr2:13127945-13128630 REVERSE LENGTH=107
Length = 106
Score = 50.8 bits (120), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 32 CDGKCKVRCSKASRHDDCLKYCGVCCASCNCVPSGTAGNKDECPCYRDMTTGHGARKRPK 91
C C+ RCS S CL +C CC C CVPSGT G+K+ECPCY + TT G PK
Sbjct: 48 CPKACEYRCSATSHRKPCLFFCNKCCNKCLCVPSGTYGHKEECPCYNNWTTKEGG---PK 104
Query: 92 CP 93
CP
Sbjct: 105 CP 106
>AT4G09610.1 | chr4:6074927-6075573 REVERSE LENGTH=100
Length = 99
Score = 49.3 bits (116), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 42/62 (67%), Gaps = 3/62 (4%)
Query: 32 CDGKCKVRCSKASRHDDCLKYCGVCCASCNCVPSGTAGNKDECPCYRDMTTGHGARKRPK 91
C G+CK RCSK+SR CL+ C CC+ CNCVP GT+GN CPCY +TT HG R K
Sbjct: 41 CGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITT-HGGRL--K 97
Query: 92 CP 93
CP
Sbjct: 98 CP 99
>AT3G02885.1 | chr3:638323-639011 REVERSE LENGTH=98
Length = 97
Score = 49.3 bits (116), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 32 CDGKCKVRCSKASRHDDCLKYCGVCCASCNCVPSGTAGNKDECPCYRDMTTGHGARKRPK 91
C+ KC RCS S C+ +C CC C CVP GT GNK CPCY + T G RPK
Sbjct: 39 CNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYNNWKTKEG---RPK 95
Query: 92 CP 93
CP
Sbjct: 96 CP 97
>AT5G14920.1 | chr5:4826598-4827761 FORWARD LENGTH=276
Length = 275
Score = 47.4 bits (111), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 32 CDGKCKVRCSKASRHDDCLKYCGVCCASCNCVPSGTAGNKDEC-PCYRDMTTGHGARK 88
C C RC + SR + C++ C CC C CVP GT GNK++C CY +M T G K
Sbjct: 216 CVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGGKSK 273
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.136 0.488
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,902,623
Number of extensions: 70242
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 15
Length of query: 93
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 29
Effective length of database: 9,351,945
Effective search space: 271206405
Effective search space used: 271206405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)