BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0755800 Os03g0755800|Os03g0755800
         (494 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0755800  Conserved hypothetical protein                      886   0.0  
Os03g0755600  Conserved hypothetical protein                      748   0.0  

>Os03g0755800 Conserved hypothetical protein
          Length = 494

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/455 (93%), Positives = 425/455 (93%)

Query: 40  PASENNGEEHADAQGCLPDISTSKSENYKERAFSTQGDLPQKAGCDLEANLCAXXXXXXX 99
           PASENNGEEHADAQGCLPDISTSKSENYKERAFSTQGDLPQKAGCDLEANLCA       
Sbjct: 40  PASENNGEEHADAQGCLPDISTSKSENYKERAFSTQGDLPQKAGCDLEANLCAESVQSSS 99

Query: 100 XXXXXXXXXXNPKRPEVKNANSAGNSEHCMLDTRKTTDHDTSSMPLQDSRFDANVRIDGL 159
                     NPKRPEVKNANSAGNSEHCMLDTRKTTDHDTSSMPLQDSRFDANVRIDGL
Sbjct: 100 SQLVHSNENSNPKRPEVKNANSAGNSEHCMLDTRKTTDHDTSSMPLQDSRFDANVRIDGL 159

Query: 160 HSTTEERVCQSTVGDGFTGMSNASYNPYSVQENQRIGPFMREPYTLHSHFLHPSHVRGYI 219
           HSTTEERVCQSTVGDGFTGMSNASYNPYSVQENQRIGPFMREPYTLHSHFLHPSHVRGYI
Sbjct: 160 HSTTEERVCQSTVGDGFTGMSNASYNPYSVQENQRIGPFMREPYTLHSHFLHPSHVRGYI 219

Query: 220 GNKFMGFPPVHPMNAFDPFNQGFNFFHTGNIPPYGVSDVHRGLNIYGLSTMGKWEYDYGR 279
           GNKFMGFPPVHPMNAFDPFNQGFNFFHTGNIPPYGVSDVHRGLNIYGLSTMGKWEYDYGR
Sbjct: 220 GNKFMGFPPVHPMNAFDPFNQGFNFFHTGNIPPYGVSDVHRGLNIYGLSTMGKWEYDYGR 279

Query: 280 HMDYTNVERNELRMTEEAYLSTHNSANFIRPSSLPLTYQQKPPITLLPRVSLTGFRXXXX 339
           HMDYTNVERNELRMTEEAYLSTHNSANFIRPSSLPLTYQQKPPITLLPRVSLTGFR    
Sbjct: 280 HMDYTNVERNELRMTEEAYLSTHNSANFIRPSSLPLTYQQKPPITLLPRVSLTGFRKKKL 339

Query: 340 XXXXXXXXXADINQDYHNSHMADAKDMSKCTFTGHKTLENIHKPLVLKELRKLWNKEEPD 399
                    ADINQDYHNSHMADAKDMSKCTFTGHKTLENIHKPLVLKELRKLWNKEEPD
Sbjct: 340 LILDLNGLLADINQDYHNSHMADAKDMSKCTFTGHKTLENIHKPLVLKELRKLWNKEEPD 399

Query: 400 LPWEQGYYSPSNTLLVDDSPYKALRNPPYTAIFPQPYSYLNSNDNSLGPGGDLRVYLENL 459
           LPWEQGYYSPSNTLLVDDSPYKALRNPPYTAIFPQPYSYLNSNDNSLGPGGDLRVYLENL
Sbjct: 400 LPWEQGYYSPSNTLLVDDSPYKALRNPPYTAIFPQPYSYLNSNDNSLGPGGDLRVYLENL 459

Query: 460 TVAEDVECYVRNNPFGQPFITQSDPHWSFYAQIAS 494
           TVAEDVECYVRNNPFGQPFITQSDPHWSFYAQIAS
Sbjct: 460 TVAEDVECYVRNNPFGQPFITQSDPHWSFYAQIAS 494



>Os03g0755600 Conserved hypothetical protein
          Length = 438

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/393 (91%), Positives = 359/393 (91%)

Query: 40  PASENNGEEHADAQGCLPDISTSKSENYKERAFSTQGDLPQKAGCDLEANLCAXXXXXXX 99
           PASENNGEEHADAQGCLPDISTSKSENYKERAFSTQGDLPQKAGCDLEANLCA       
Sbjct: 43  PASENNGEEHADAQGCLPDISTSKSENYKERAFSTQGDLPQKAGCDLEANLCAESVQSSS 102

Query: 100 XXXXXXXXXXNPKRPEVKNANSAGNSEHCMLDTRKTTDHDTSSMPLQDSRFDANVRIDGL 159
                     NPKRPEVKNANSAGNSEHCMLDTRKTTDHDTSSMPLQDSRFDANVRIDGL
Sbjct: 103 SQLVHSNENSNPKRPEVKNANSAGNSEHCMLDTRKTTDHDTSSMPLQDSRFDANVRIDGL 162

Query: 160 HSTTEERVCQSTVGDGFTGMSNASYNPYSVQENQRIGPFMREPYTLHSHFLHPSHVRGYI 219
           HSTTEERVCQSTVGDGFTGMSNASYNPYSVQENQRIGPFMREPYTLHSHFLHPSHVRGYI
Sbjct: 163 HSTTEERVCQSTVGDGFTGMSNASYNPYSVQENQRIGPFMREPYTLHSHFLHPSHVRGYI 222

Query: 220 GNKFMGFPPVHPMNAFDPFNQGFNFFHTGNIPPYGVSDVHRGLNIYGLSTMGKWEYDYGR 279
           GNKFMGFPPVHPMNAFDPFNQGFNFFHTGNIPPYGVSDVHRGLNIYGLSTMGKWEYDYGR
Sbjct: 223 GNKFMGFPPVHPMNAFDPFNQGFNFFHTGNIPPYGVSDVHRGLNIYGLSTMGKWEYDYGR 282

Query: 280 HMDYTNVERNELRMTEEAYLSTHNSANFIRPSSLPLTYQQKPPITLLPRVSLTGFRXXXX 339
           HMDYTNVERNELRMTEEAYLSTHNSANFIRPSSLPLTYQQKPPITLLPRVSLTGFR    
Sbjct: 283 HMDYTNVERNELRMTEEAYLSTHNSANFIRPSSLPLTYQQKPPITLLPRVSLTGFRKKKL 342

Query: 340 XXXXXXXXXADINQDYHNSHMADAKDMSKCTFTGHKTLENIHKPLVLKELRKLWNKEEPD 399
                    ADINQDYHNSHMADAKDMSKCTFTGHKTLENIHKPLVLKELRKLWNKEEPD
Sbjct: 343 LILDLNGLLADINQDYHNSHMADAKDMSKCTFTGHKTLENIHKPLVLKELRKLWNKEEPD 402

Query: 400 LPWEQGYYSPSNTLLVDDSPYKALRNPPYTAIF 432
           LPWEQGYYSPSNTLLVDDSPYKALRNP    IF
Sbjct: 403 LPWEQGYYSPSNTLLVDDSPYKALRNPALVEIF 435



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,311,401
Number of extensions: 703656
Number of successful extensions: 1114
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1112
Number of HSP's successfully gapped: 2
Length of query: 494
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 389
Effective length of database: 11,553,331
Effective search space: 4494245759
Effective search space used: 4494245759
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)