Os03g0755600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0755600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.87 | 0.361 | 9.78 | -0.469 | 1.51 | -0.499 | -0.174 | 1.2 | -0.108 | 6.08 | 19.66 | 1346 | -- | -- |
| 62.45 | 0.368 | 9.78 | -0.468 | 1.51 | -0.494 | -0.106 | -- | -0.107 | 6.07 | 19.52 | 1343 | -- | -- |
| 58.94 | 0.358 | 9.78 | -0.474 | 1.51 | -0.501 | -- | 1.21 | -0.11 | 6.08 | 19.66 | 1340 | -- | -- |
| 62.38 | 0.368 | 9.77 | -0.451 | 1.5 | -0.449 | -- | -- | -0.0872 | 6.05 | 19.51 | 1343 | -- | -- |
| 176.98 | 0.62 | 9.78 | -0.54 | -- | -0.47 | -- | 1.3 | -0.0975 | -- | 19.93 | 1379 | -- | -- |
| 69.87 | 0.392 | 9.74 | -0.324 | 1.51 | -- | -0.115 | -- | 0.0342 | 5.88 | -- | -- | -- | -- |
| 69.9 | 0.392 | 9.74 | -0.325 | 1.51 | -- | -- | -- | 0.0347 | 5.88 | -- | -- | -- | -- |
| 178.66 | 0.623 | 9.78 | -0.334 | -- | -0.474 | -- | -- | -0.0363 | -- | 19.52 | 1389 | -- | -- |
| 65.98 | 0.378 | 9.77 | -- | 1.5 | -0.442 | -- | -- | -0.0838 | 6.04 | 19.6 | 1345 | -- | -- |
| 187.8 | 0.64 | 9.77 | -0.279 | -- | -- | -- | -- | 0.0696 | -- | -- | -- | -- | -- |
| 72.69 | 0.399 | 9.74 | -- | 1.5 | -- | -- | -- | 0.0709 | 5.89 | -- | -- | -- | -- |
| 181.47 | 0.627 | 9.78 | -- | -- | -0.485 | -- | -- | -0.0367 | -- | 19.65 | 1390 | -- | -- |
| 189.86 | 0.643 | 9.76 | -- | -- | -- | -- | -- | 0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.45 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 4 |
| 3 | 57.78 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 21 |
| 8 | 58.32 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 13 |
| 13 | 58.84 | humidity | 80 | 720 | < th | dose dependent | rect. | 19 | 13 |
| 14 | 58.87 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 6 |
| 15 | 58.88 | radiation | 20 | 1440 | < th | dose independent | rect. | 24 | 13 |
| 21 | 58.89 | radiation | 20 | 1440 | < th | dose independent | rect. | 18 | 19 |
| 23 | 58.90 | radiation | 20 | 1440 | < th | dose independent | rect. | 3 | 10 |
| 42 | 58.97 | humidity | 80 | 720 | < th | dose dependent | rect. | 20 | 2 |
| 64 | 59.07 | radiation | 20 | 1440 | < th | dose independent | sin | 5 | NA |
| 69 | 59.18 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 70 | 59.19 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 71 | 59.19 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 7 |
| 72 | 59.20 | radiation | 10 | 1440 | < th | dose dependent | rect. | 7 | 9 |
| 76 | 59.26 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 78 | 59.28 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 103 | 59.40 | radiation | 20 | 1440 | < th | dose dependent | rect. | 24 | 16 |
| 114 | 59.43 | radiation | 20 | 1440 | < th | dose dependent | rect. | 5 | 10 |
| 116 | 59.43 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 13 |
| 122 | 59.43 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 21 |
| 135 | 59.46 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 137 | 59.47 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 18 |
| 150 | 59.63 | radiation | 20 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 174 | 59.71 | humidity | 80 | 720 | < th | dose independent | rect. | 18 | 19 |
| 186 | 59.73 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 22 |
| 189 | 59.74 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 199 | 59.74 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 19 |
| 206 | 59.74 | radiation | 20 | 1440 | < th | dose independent | rect. | 3 | 22 |
| 222 | 59.74 | radiation | 20 | 1440 | < th | dose dependent | sin | 2 | NA |
| 316 | 59.88 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 14 |
| 379 | 59.99 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 381 | 60.00 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 15 |
| 431 | 60.09 | radiation | 20 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 432 | 60.10 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 434 | 60.11 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 21 |
| 443 | 60.15 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 450 | 60.16 | radiation | 20 | 1440 | < th | dose dependent | rect. | 7 | 21 |
| 454 | 60.17 | radiation | 20 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 481 | 60.18 | radiation | 20 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 484 | 60.19 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 495 | 60.19 | radiation | 20 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 513 | 60.20 | radiation | 20 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 555 | 60.23 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 5 |
| 597 | 60.28 | temperature | 20 | 270 | < th | dose independent | rect. | 24 | 8 |
| 635 | 60.33 | radiation | 20 | 1440 | < th | dose dependent | rect. | 14 | 23 |
| 643 | 60.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 668 | 60.39 | humidity | 80 | 720 | < th | dose dependent | rect. | 19 | 8 |
| 678 | 60.42 | temperature | 20 | 720 | > th | dose independent | sin | 11 | NA |
| 691 | 60.45 | humidity | 80 | 1440 | < th | dose independent | sin | 6 | NA |
| 699 | 60.46 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 20 |
| 702 | 60.47 | temperature | 20 | 720 | < th | dose independent | sin | 11 | NA |
| 710 | 60.48 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 13 |
| 735 | 60.52 | humidity | 80 | 1440 | > th | dose independent | sin | 5 | NA |
| 747 | 60.54 | humidity | 80 | 720 | > th | dose independent | rect. | 20 | 14 |
| 844 | 60.59 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 8 |
| 866 | 60.62 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 887 | 60.64 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 2 |
| 890 | 60.64 | humidity | 80 | 720 | > th | dose independent | rect. | 20 | 7 |
| 902 | 60.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 934 | 60.69 | wind | 5 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 942 | 60.70 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 8 |
| 976 | 60.73 | radiation | 10 | 1440 | > th | dose independent | rect. | 7 | 6 |
| 998 | 60.74 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 19 |