BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0755600 Os03g0755600|Os03g0755600
         (438 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0755600  Conserved hypothetical protein                      764   0.0  
Os03g0755800  Conserved hypothetical protein                      747   0.0  

>Os03g0755600 Conserved hypothetical protein
          Length = 438

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/438 (85%), Positives = 373/438 (85%)

Query: 1   MLPMVMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPASENNGEEHADAQGCLP 60
           MLPMVML                                   PASENNGEEHADAQGCLP
Sbjct: 1   MLPMVMLQGGGGAASSSSSKRRNQQRRQRRKRAAAGKKQGGSPASENNGEEHADAQGCLP 60

Query: 61  DISTSKSENYKERAFSTQGDLPQKAGCDLEANLCAXXXXXXXXXXXXXXXXXNPKRPEVK 120
           DISTSKSENYKERAFSTQGDLPQKAGCDLEANLCA                 NPKRPEVK
Sbjct: 61  DISTSKSENYKERAFSTQGDLPQKAGCDLEANLCAESVQSSSSQLVHSNENSNPKRPEVK 120

Query: 121 NANSAGNSEHCMLDTRKTTDHDTSSMPLQDSRFDANVRIDGLHSTTEERVCQSTVGDGFT 180
           NANSAGNSEHCMLDTRKTTDHDTSSMPLQDSRFDANVRIDGLHSTTEERVCQSTVGDGFT
Sbjct: 121 NANSAGNSEHCMLDTRKTTDHDTSSMPLQDSRFDANVRIDGLHSTTEERVCQSTVGDGFT 180

Query: 181 GMSNASYNPYSVQENQRIGPFMREPYTLHSHFLHPSHVRGYIGNKFMGFPPVHPMNAFDP 240
           GMSNASYNPYSVQENQRIGPFMREPYTLHSHFLHPSHVRGYIGNKFMGFPPVHPMNAFDP
Sbjct: 181 GMSNASYNPYSVQENQRIGPFMREPYTLHSHFLHPSHVRGYIGNKFMGFPPVHPMNAFDP 240

Query: 241 FNQGFNFFHTGNIPPYGVSDVHRGLNIYGLSTMGKWEYDYGRHMDYTNVERNELRMTEEA 300
           FNQGFNFFHTGNIPPYGVSDVHRGLNIYGLSTMGKWEYDYGRHMDYTNVERNELRMTEEA
Sbjct: 241 FNQGFNFFHTGNIPPYGVSDVHRGLNIYGLSTMGKWEYDYGRHMDYTNVERNELRMTEEA 300

Query: 301 YLSTHNSANFIRPSSLPLTYQQKPPITLLPRVSLTGFRXXXXXXXXXXXXXADINQDYHN 360
           YLSTHNSANFIRPSSLPLTYQQKPPITLLPRVSLTGFR             ADINQDYHN
Sbjct: 301 YLSTHNSANFIRPSSLPLTYQQKPPITLLPRVSLTGFRKKKLLILDLNGLLADINQDYHN 360

Query: 361 SHMADAKDMSKCTFTGHKTLENIHKPLVLKELRKLWNKEEPDLPWEQGYYSPSNTLLVDD 420
           SHMADAKDMSKCTFTGHKTLENIHKPLVLKELRKLWNKEEPDLPWEQGYYSPSNTLLVDD
Sbjct: 361 SHMADAKDMSKCTFTGHKTLENIHKPLVLKELRKLWNKEEPDLPWEQGYYSPSNTLLVDD 420

Query: 421 SPYKALRNPALVEIFVFI 438
           SPYKALRNPALVEIFVFI
Sbjct: 421 SPYKALRNPALVEIFVFI 438



>Os03g0755800 Conserved hypothetical protein
          Length = 494

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/393 (91%), Positives = 359/393 (91%)

Query: 43  PASENNGEEHADAQGCLPDISTSKSENYKERAFSTQGDLPQKAGCDLEANLCAXXXXXXX 102
           PASENNGEEHADAQGCLPDISTSKSENYKERAFSTQGDLPQKAGCDLEANLCA       
Sbjct: 40  PASENNGEEHADAQGCLPDISTSKSENYKERAFSTQGDLPQKAGCDLEANLCAESVQSSS 99

Query: 103 XXXXXXXXXXNPKRPEVKNANSAGNSEHCMLDTRKTTDHDTSSMPLQDSRFDANVRIDGL 162
                     NPKRPEVKNANSAGNSEHCMLDTRKTTDHDTSSMPLQDSRFDANVRIDGL
Sbjct: 100 SQLVHSNENSNPKRPEVKNANSAGNSEHCMLDTRKTTDHDTSSMPLQDSRFDANVRIDGL 159

Query: 163 HSTTEERVCQSTVGDGFTGMSNASYNPYSVQENQRIGPFMREPYTLHSHFLHPSHVRGYI 222
           HSTTEERVCQSTVGDGFTGMSNASYNPYSVQENQRIGPFMREPYTLHSHFLHPSHVRGYI
Sbjct: 160 HSTTEERVCQSTVGDGFTGMSNASYNPYSVQENQRIGPFMREPYTLHSHFLHPSHVRGYI 219

Query: 223 GNKFMGFPPVHPMNAFDPFNQGFNFFHTGNIPPYGVSDVHRGLNIYGLSTMGKWEYDYGR 282
           GNKFMGFPPVHPMNAFDPFNQGFNFFHTGNIPPYGVSDVHRGLNIYGLSTMGKWEYDYGR
Sbjct: 220 GNKFMGFPPVHPMNAFDPFNQGFNFFHTGNIPPYGVSDVHRGLNIYGLSTMGKWEYDYGR 279

Query: 283 HMDYTNVERNELRMTEEAYLSTHNSANFIRPSSLPLTYQQKPPITLLPRVSLTGFRXXXX 342
           HMDYTNVERNELRMTEEAYLSTHNSANFIRPSSLPLTYQQKPPITLLPRVSLTGFR    
Sbjct: 280 HMDYTNVERNELRMTEEAYLSTHNSANFIRPSSLPLTYQQKPPITLLPRVSLTGFRKKKL 339

Query: 343 XXXXXXXXXADINQDYHNSHMADAKDMSKCTFTGHKTLENIHKPLVLKELRKLWNKEEPD 402
                    ADINQDYHNSHMADAKDMSKCTFTGHKTLENIHKPLVLKELRKLWNKEEPD
Sbjct: 340 LILDLNGLLADINQDYHNSHMADAKDMSKCTFTGHKTLENIHKPLVLKELRKLWNKEEPD 399

Query: 403 LPWEQGYYSPSNTLLVDDSPYKALRNPALVEIF 435
           LPWEQGYYSPSNTLLVDDSPYKALRNP    IF
Sbjct: 400 LPWEQGYYSPSNTLLVDDSPYKALRNPPYTAIF 432



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,745,406
Number of extensions: 562639
Number of successful extensions: 901
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 899
Number of HSP's successfully gapped: 2
Length of query: 438
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 334
Effective length of database: 11,605,545
Effective search space: 3876252030
Effective search space used: 3876252030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)