BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0750900 Os03g0750900|J033060N05
         (219 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0750900  Conserved hypothetical protein                      320   4e-88
Os05g0547100  Conserved hypothetical protein                      153   8e-38

>Os03g0750900 Conserved hypothetical protein
          Length = 219

 Score =  320 bits (820), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 164/184 (89%), Positives = 164/184 (89%)

Query: 36  SRALVPARSGRDLRAPAAQHGNLGSVLRRLISMDXXXXXXXXXXXXXXXXXXXXNGSGGK 95
           SRALVPARSGRDLRAPAAQHGNLGSVLRRLISMD                    NGSGGK
Sbjct: 36  SRALVPARSGRDLRAPAAQHGNLGSVLRRLISMDKKPAKNLPVPPAAAAAAAAKNGSGGK 95

Query: 96  LPGLSRKLFQKGSSEPKKKALTEVKNGGNTRTLAMVLRSERELLTQSKEQEDEIAALRLQ 155
           LPGLSRKLFQKGSSEPKKKALTEVKNGGNTRTLAMVLRSERELLTQSKEQEDEIAALRLQ
Sbjct: 96  LPGLSRKLFQKGSSEPKKKALTEVKNGGNTRTLAMVLRSERELLTQSKEQEDEIAALRLQ 155

Query: 156 LEQKDTEQVERLKDLCLRQREEIRTLKDAVLFPDTQPDRHLRDEISTLTGQIQCLAEELA 215
           LEQKDTEQVERLKDLCLRQREEIRTLKDAVLFPDTQPDRHLRDEISTLTGQIQCLAEELA
Sbjct: 156 LEQKDTEQVERLKDLCLRQREEIRTLKDAVLFPDTQPDRHLRDEISTLTGQIQCLAEELA 215

Query: 216 QACS 219
           QACS
Sbjct: 216 QACS 219



>Os05g0547100 Conserved hypothetical protein
          Length = 145

 Score =  153 bits (387), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 86/126 (68%), Positives = 91/126 (72%), Gaps = 17/126 (13%)

Query: 90  NGSGGKLPGLSRKLFQKGSSEPKKKALTEVKNGGNTRTLAMVLRSERELLTQSKEQEDEI 149
           N +GGKLPGLSRKLFQK  SE KK ALTEVK+GGNTR LAMVLR          E  DEI
Sbjct: 23  NSNGGKLPGLSRKLFQKAPSEHKKNALTEVKSGGNTRALAMVLRG---------EWVDEI 73

Query: 150 AALRLQLEQKDTEQVERLKDLCLRQREEIRTLKDAVLFPDTQPDRHLRDEISTLTGQIQC 209
           AALRLQ EQKD E VERLKDLCL QREEI TLK AV FP TQPD +       LTGQIQ 
Sbjct: 74  AALRLQFEQKDIE-VERLKDLCLWQREEIWTLKGAVFFPATQPDHN-------LTGQIQY 125

Query: 210 LAEELA 215
           LAE++A
Sbjct: 126 LAEKIA 131



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.130    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,506,454
Number of extensions: 187990
Number of successful extensions: 630
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 627
Number of HSP's successfully gapped: 2
Length of query: 219
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 122
Effective length of database: 11,971,043
Effective search space: 1460467246
Effective search space used: 1460467246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 154 (63.9 bits)