Os05g0547100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0547100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.89 | 0.361 | 8.12 | -0.271 | 0.5 | 0.546 | -0.272 | 0.684 | -0.0424 | 4.78 | 26.2 | 4595 | -- | -- |
| 59.18 | 0.358 | 8.13 | -0.366 | 0.52 | 0.6 | -0.146 | -- | -0.0478 | 4.87 | 26.3 | 4640 | -- | -- |
| 59.08 | 0.358 | 8.12 | -0.278 | 0.506 | 0.546 | -- | 0.654 | -0.044 | 4.83 | 26.12 | 4640 | -- | -- |
| 59.21 | 0.358 | 8.13 | -0.416 | 0.507 | 0.603 | -- | -- | -0.0608 | 4.84 | 26.62 | 4639 | -- | -- |
| 71.21 | 0.393 | 8.12 | -0.224 | -- | 0.527 | -- | 0.798 | -0.0485 | -- | 26.1 | 5629 | -- | -- |
| 71.6 | 0.397 | 8.14 | -0.233 | 0.504 | -- | -0.24 | -- | -0.071 | 4.6 | -- | -- | -- | -- |
| 71.76 | 0.397 | 8.13 | -0.231 | 0.502 | -- | -- | -- | -0.0698 | 4.61 | -- | -- | -- | -- |
| 71.38 | 0.394 | 8.14 | -0.415 | -- | 0.572 | -- | -- | -0.0835 | -- | 26.69 | 5666 | -- | -- |
| 63.42 | 0.371 | 8.12 | -- | 0.49 | 0.505 | -- | -- | 0.00405 | 4.83 | 27.68 | 4560 | -- | -- |
| 85.19 | 0.431 | 8.14 | -0.212 | -- | -- | -- | -- | -0.0566 | -- | -- | -- | -- | -- |
| 73.17 | 0.4 | 8.13 | -- | 0.498 | -- | -- | -- | -0.044 | 4.62 | -- | -- | -- | -- |
| 75.19 | 0.404 | 8.12 | -- | -- | 0.462 | -- | -- | 0.00646 | -- | 28.45 | 5721 | -- | -- |
| 86.37 | 0.434 | 8.13 | -- | -- | -- | -- | -- | -0.0331 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.01 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 4 |
| 2 | 58.03 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 6 | 58.27 | temperature | 25 | 4320 | > th | dose dependent | rect. | 1 | 7 |
| 7 | 58.30 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 9 |
| 9 | 58.31 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 11 |
| 18 | 58.42 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 19 | 58.42 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 44 | 58.65 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 50 | 58.67 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 8 |
| 51 | 58.67 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 10 |
| 96 | 58.78 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 135 | 58.84 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 137 | 58.85 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 146 | 58.86 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 19 |
| 156 | 58.90 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 161 | 58.91 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 7 |
| 175 | 58.91 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 178 | 58.92 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 184 | 58.94 | temperature | 25 | 4320 | > th | dose dependent | sin | 8 | NA |
| 191 | 58.95 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 19 |
| 197 | 58.96 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 8 |
| 250 | 58.98 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 252 | 58.99 | temperature | 30 | 4320 | > th | dose independent | sin | 5 | NA |
| 253 | 58.99 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 303 | 59.01 | temperature | 30 | 4320 | < th | dose independent | sin | 4 | NA |
| 358 | 59.02 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 22 |
| 428 | 59.06 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 441 | 59.08 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 453 | 59.09 | temperature | 25 | 270 | > th | dose dependent | sin | 3 | NA |
| 521 | 59.13 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 19 |
| 622 | 59.16 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 22 |
| 630 | 59.17 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 631 | 59.17 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 632 | 59.17 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 781 | 59.17 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 860 | 59.23 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 950 | 59.28 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 6 |