BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0748200 Os03g0748200|AK106146
(253 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0748200 Similar to Inhibitor of growth protein 3 (p47I... 530 e-151
Os03g0143600 Similar to Inhibitor of growth protein 1. Spli... 125 2e-29
>Os03g0748200 Similar to Inhibitor of growth protein 3 (p47ING3 protein)
Length = 253
Score = 530 bits (1364), Expect = e-151, Method: Compositional matrix adjust.
Identities = 253/253 (100%), Positives = 253/253 (100%)
Query: 1 MAIARTGVYVDDYLEYSSTLAGDLQRILSTMRELDERAHGIMGQTKEQIKYLLGVPSHGF 60
MAIARTGVYVDDYLEYSSTLAGDLQRILSTMRELDERAHGIMGQTKEQIKYLLGVPSHGF
Sbjct: 1 MAIARTGVYVDDYLEYSSTLAGDLQRILSTMRELDERAHGIMGQTKEQIKYLLGVPSHGF 60
Query: 61 DRSNMDDDESASERMKKDIEASQDNALSLCTEKVLLARQAYDLIESHIKRLDEDLGQFAE 120
DRSNMDDDESASERMKKDIEASQDNALSLCTEKVLLARQAYDLIESHIKRLDEDLGQFAE
Sbjct: 61 DRSNMDDDESASERMKKDIEASQDNALSLCTEKVLLARQAYDLIESHIKRLDEDLGQFAE 120
Query: 121 DLKQEGKIPPDEPSILPAISAFSRDDKRRPGFSTPQATKKFREREWDRERGMDFDLMPPP 180
DLKQEGKIPPDEPSILPAISAFSRDDKRRPGFSTPQATKKFREREWDRERGMDFDLMPPP
Sbjct: 121 DLKQEGKIPPDEPSILPAISAFSRDDKRRPGFSTPQATKKFREREWDRERGMDFDLMPPP 180
Query: 181 GSNKKTTAPMDVDQTIDPNEPTYCICHQISYGDMIACDNDNCEGGEWFHYTCVGLTPETR 240
GSNKKTTAPMDVDQTIDPNEPTYCICHQISYGDMIACDNDNCEGGEWFHYTCVGLTPETR
Sbjct: 181 GSNKKTTAPMDVDQTIDPNEPTYCICHQISYGDMIACDNDNCEGGEWFHYTCVGLTPETR 240
Query: 241 FKGKWFCPTCRNL 253
FKGKWFCPTCRNL
Sbjct: 241 FKGKWFCPTCRNL 253
>Os03g0143600 Similar to Inhibitor of growth protein 1. Splice isoform 2
Length = 253
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 133/249 (53%), Gaps = 15/249 (6%)
Query: 9 YVDDYLEYSSTLAGDLQRILSTMRELDERAHGIMGQTKEQIKYLLGVPSHGFDRSNMDDD 68
+++D+ L LQR S MRELD+ G+ +++ + + HG + ++ D
Sbjct: 3 FLEDFQASVEALPAMLQRNYSLMRELDKSLQGVQTGNEQRCQQEIEDIKHGLESGSITYD 62
Query: 69 ESASERMKKDIEASQDNALSLCTEKVLLARQAYDLIESHIKRLDEDLGQFAEDLKQEGKI 128
+ + + IE Q + + + EKV LA Q YDL+++HI++LD+ + + E+L+QE +
Sbjct: 63 PAKLKFSDEAIE-EQKHCVRIADEKVALASQTYDLVDAHIQQLDQFMRKL-EELRQEKEA 120
Query: 129 PPDEPSI-------LPAISAFSRDDKRRPGFSTPQATKKFREREWDRERGMDFDLMPPPG 181
+ + + + G ST T K R +R RG P
Sbjct: 121 ATTAAAAAAAAAASVATGTPVAATVTASAGTSTADNTPKGG-RSSERGRGGRKKTAKVP- 178
Query: 182 SNKKTTAPMDVDQTIDPNEPTYCICHQISYGDMIACDNDNCEGGEWFHYTCVGLTPETRF 241
++ +D++ +DPNEPTYC+C+Q+SYG+M+ACDN++C+ EW+H+ CVG+
Sbjct: 179 -TEQPAPAIDLELPVDPNEPTYCLCNQVSYGEMVACDNNDCK-IEWYHFGCVGVKEHP-- 234
Query: 242 KGKWFCPTC 250
KGKW+CP+C
Sbjct: 235 KGKWYCPSC 243
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,870,439
Number of extensions: 445223
Number of successful extensions: 1429
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1425
Number of HSP's successfully gapped: 2
Length of query: 253
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 154
Effective length of database: 11,866,615
Effective search space: 1827458710
Effective search space used: 1827458710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)