BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0742800 Os03g0742800|AK102769
(757 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0742800 Similar to Auxin-responsive protein IAA14 (Ind... 1418 0.0
Os08g0474700 Similar to COPII subunit Sec23 (Fragment) 574 e-164
Os11g0433500 Similar to Protein transport protein Sec23A (S... 364 e-100
>Os03g0742800 Similar to Auxin-responsive protein IAA14 (Indoleacetic
acid-induced protein 14) (SOLITARY-ROOT protein)
Length = 757
Score = 1418 bits (3671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 698/757 (92%), Positives = 698/757 (92%)
Query: 1 MDFAELEAVEGLRWPWHAWPPTASAAASLVVPTSVLCTXXXXXXXXXXXXXXXXXXRXXX 60
MDFAELEAVEGLRWPWHAWPPTASAAASLVVPTSVLCT R
Sbjct: 1 MDFAELEAVEGLRWPWHAWPPTASAAASLVVPTSVLCTPLHPAAPDLLPLLPYAPLRCGG 60
Query: 61 XXXXXXXXAALNPFSRVHHATARWACPFCGASANPFPRLLAPDALPAELFPTHSSVEYXX 120
AALNPFSRVHHATARWACPFCGASANPFPRLLAPDALPAELFPTHSSVEY
Sbjct: 61 GGGGGGCGAALNPFSRVHHATARWACPFCGASANPFPRLLAPDALPAELFPTHSSVEYAL 120
Query: 121 XXXXXXXXXXXXXXSVVFVVDAATSGPELAALKAEVLRVVQGLPEGVRVALVSFAASVWV 180
SVVFVVDAATSGPELAALKAEVLRVVQGLPEGVRVALVSFAASVWV
Sbjct: 121 PPDAAEAGGGPGPPSVVFVVDAATSGPELAALKAEVLRVVQGLPEGVRVALVSFAASVWV 180
Query: 181 HDLGFEGCTRVVVMNGERELESEKIQEFLGVRDARYNKLAMPRSTKVQRFLLPVSECEFN 240
HDLGFEGCTRVVVMNGERELESEKIQEFLGVRDARYNKLAMPRSTKVQRFLLPVSECEFN
Sbjct: 181 HDLGFEGCTRVVVMNGERELESEKIQEFLGVRDARYNKLAMPRSTKVQRFLLPVSECEFN 240
Query: 241 ITSAIEDLRSMSACPRGHRPLRATGAAISTAVALLEGCCSPNAGGRIMVFTSGPTTVGPG 300
ITSAIEDLRSMSACPRGHRPLRATGAAISTAVALLEGCCSPNAGGRIMVFTSGPTTVGPG
Sbjct: 241 ITSAIEDLRSMSACPRGHRPLRATGAAISTAVALLEGCCSPNAGGRIMVFTSGPTTVGPG 300
Query: 301 LVVETDLGKAIRSHRDIFNGNAPLIDKAREFYKKVANRLTAHALVLDLFACSLDQVGAAE 360
LVVETDLGKAIRSHRDIFNGNAPLIDKAREFYKKVANRLTAHALVLDLFACSLDQVGAAE
Sbjct: 301 LVVETDLGKAIRSHRDIFNGNAPLIDKAREFYKKVANRLTAHALVLDLFACSLDQVGAAE 360
Query: 361 LRYPIEVSGGLMVHTESFESEQFKACLRHIFNREGVGYLNMNFNATIEIVTSREVKICGA 420
LRYPIEVSGGLMVHTESFESEQFKACLRHIFNREGVGYLNMNFNATIEIVTSREVKICGA
Sbjct: 361 LRYPIEVSGGLMVHTESFESEQFKACLRHIFNREGVGYLNMNFNATIEIVTSREVKICGA 420
Query: 421 LGPCISLHRKNSSVSDKEIGEGGTNYWKMSTVDSKTCIVFFFRVDCSHNTEPPTVFFIQF 480
LGPCISLHRKNSSVSDKEIGEGGTNYWKMSTVDSKTCIVFFFRVDCSHNTEPPTVFFIQF
Sbjct: 421 LGPCISLHRKNSSVSDKEIGEGGTNYWKMSTVDSKTCIVFFFRVDCSHNTEPPTVFFIQF 480
Query: 481 MTRYRHGDGSYRLRVTTVARRWAGPRSPEIAAGFDQEXXXXXXXXXXXXXXETYHVRDVI 540
MTRYRHGDGSYRLRVTTVARRWAGPRSPEIAAGFDQE ETYHVRDVI
Sbjct: 481 MTRYRHGDGSYRLRVTTVARRWAGPRSPEIAAGFDQEAAAAVMARLAVHRAETYHVRDVI 540
Query: 541 RWLDKMLIRFTAKFGNYVPEDPSTFRLSTNFSLYPQFMYYLRRSQFIDVFNSSPDETAFF 600
RWLDKMLIRFTAKFGNYVPEDPSTFRLSTNFSLYPQFMYYLRRSQFIDVFNSSPDETAFF
Sbjct: 541 RWLDKMLIRFTAKFGNYVPEDPSTFRLSTNFSLYPQFMYYLRRSQFIDVFNSSPDETAFF 600
Query: 601 RLMLNREGVVGSLIMIQPTLFQYSFDGPPIPVLLDVSSISPDVILLFDSYFYIVIHYGSK 660
RLMLNREGVVGSLIMIQPTLFQYSFDGPPIPVLLDVSSISPDVILLFDSYFYIVIHYGSK
Sbjct: 601 RLMLNREGVVGSLIMIQPTLFQYSFDGPPIPVLLDVSSISPDVILLFDSYFYIVIHYGSK 660
Query: 661 IAQWRKLGYHKDPNHENLRKLLEAPEVDAEALLVDRFPVPKLIKCDQHGSQARFLLARLN 720
IAQWRKLGYHKDPNHENLRKLLEAPEVDAEALLVDRFPVPKLIKCDQHGSQARFLLARLN
Sbjct: 661 IAQWRKLGYHKDPNHENLRKLLEAPEVDAEALLVDRFPVPKLIKCDQHGSQARFLLARLN 720
Query: 721 PSVTQKTQLSDGSEVIFTDDVSLQVFIEHLQELAVQG 757
PSVTQKTQLSDGSEVIFTDDVSLQVFIEHLQELAVQG
Sbjct: 721 PSVTQKTQLSDGSEVIFTDDVSLQVFIEHLQELAVQG 757
>Os08g0474700 Similar to COPII subunit Sec23 (Fragment)
Length = 763
Score = 574 bits (1480), Expect = e-164, Method: Compositional matrix adjust.
Identities = 325/781 (41%), Positives = 443/781 (56%), Gaps = 46/781 (5%)
Query: 2 DFAELEAVEGLRWPWHAWPPTASAAASLVVPTSVLCTXXXXXXXXXXXXXXXXXXRXXXX 61
+F +LE +G+R PW+ P T AA+ VVP S + T R
Sbjct: 3 EFLDLELQDGIRMPWNVIPGTKQDAANCVVPVSAIYTPLRPNPAIPVLPYGPLRCRMCR- 61
Query: 62 XXXXXXXAALNPFSRVHHATARWACPFCGASANPFPR---LLAPDALPAELFPTHSSVEY 118
+ LNPF V + W CPFC N FP+ ++ LPAELFP +++VE+
Sbjct: 62 -------SILNPFCVVDYVAKIWVCPFC-FQRNHFPQHYSSISESNLPAELFPQYTTVEF 113
Query: 119 XXXXXXXXXXXXXXXXSVVFVVDAATSGPELAALKAEVLRVVQGLPEGVRVALVSFAASV 178
V D E+ LK+ + + ++ LP+ V ++F V
Sbjct: 114 MSTAETGPVVPPVFLFVV----DTCMIEEEIDYLKSALAQAIELLPDQSLVGFITFGTYV 169
Query: 179 WVHDLGFEGCTRVVVMNGERELESEKIQE----FLGVRDARYNKLAMPR----STKVQRF 230
VH+LGF + V G +E+ ++I E F G +A R + + RF
Sbjct: 170 QVHELGFGLLPKSYVFKGTKEVTKDQILEQMCFFAGKTKPTTGVIAGSRDGLSAESISRF 229
Query: 231 LLPVSECEFNITSAIEDLRS----MSACPRGHRPLRATGAAISTAVALLEGCCSPNAGGR 286
LLP SECEF + S IE+L+ +SA R R TG A+S A +LL G C P +G R
Sbjct: 230 LLPASECEFVLNSIIEELQKDPWPVSA---DQRASRCTGTALSVAASLL-GVCVPGSGAR 285
Query: 287 IMVFTSGPTTVGPGLVVETDLGKAIRSHRDIFNGNAPLIDKAREFYKKVANRLTAHALVL 346
IM F GP+T GPG +V L + IRSH+D+ G+APL KA +FY++++ +L VL
Sbjct: 286 IMAFIGGPSTEGPGSIVSKSLSEPIRSHKDLDKGSAPLYTKAVKFYEEISKQLVHQGHVL 345
Query: 347 DLFACSLDQVGAAELRYPIEVSGGLMVHTESFESEQFKACLRHIFNREGVGYLNMNFNAT 406
D FAC+LDQVG AE++ +E +GG++V ESF FK L+ IF L ++FN
Sbjct: 346 DFFACALDQVGVAEMKVAVERTGGIVVLAESFGHSVFKESLQRIFQSSD-NDLGLSFNGI 404
Query: 407 IEIVTSREVKICGALGPCISLHRKNSSVSDKEIGEGGTNYWKMSTVDSKTCIVFFFRVDC 466
EI S++VKI G +GPC SL +K+ SD +G+G T+ WKM +D KT I F D
Sbjct: 405 FEINCSKDVKIQGIIGPCTSLEKKSPLSSDTVVGQGSTSAWKMCGLDRKTSICLVF--DI 462
Query: 467 SHNTEPPTV-------FFIQFMTRYRHGDGSYRLRVTTVARRWAGPRS--PEIAAGFDQE 517
+ P + F+ QF+T Y+H +G RLR TT++RRW ++ GFDQE
Sbjct: 463 AKKDGPDAISQSTSNQFYFQFLTYYQHHEGQMRLRATTLSRRWVAGSGGVQDLIDGFDQE 522
Query: 518 XXXXXXXXXXXXXXETYHVRDVIRWLDKMLIRFTAKFGNYVPEDPSTFRLSTNFSLYPQF 577
E D IRWLD+ LI +KFG+Y E PS+F LS S++PQF
Sbjct: 523 AAAAVMARLVSFKMEAEADFDPIRWLDRALISMCSKFGDYQKETPSSFSLSPRLSIFPQF 582
Query: 578 MYYLRRSQFIDVFNSSPDETAFFRLMLNREGVVGSLIMIQPTLFQYSFDGPPIPVLLDVS 637
M+ LRRSQF+ VFN+SPDETA+FR+MLNRE V +++MIQP+L YSF P PVLLDV+
Sbjct: 583 MFNLRRSQFVQVFNNSPDETAYFRMMLNRENVANAVVMIQPSLISYSFQSGPEPVLLDVT 642
Query: 638 SISPDVILLFDSYFYIVIHYGSKIAQWRKLGYHKDPNHENLRKLLEAPEVDAEALLVDRF 697
+I+ D ILL DSYF IVI +G IAQWRK GY HE +LL+AP + ++++ +RF
Sbjct: 643 AIAADRILLLDSYFTIVIFHGITIAQWRKAGYQDQQGHEAFAQLLKAPREETDSIIKERF 702
Query: 698 PVPKLIKCDQHGSQARFLLARLNPSVTQKTQL--SDGSEVIFTDDVSLQVFIEHLQELAV 755
PVP+L+ CDQ+GSQARFLLA+LNPSVT + G +VIFTDDVS +VF++HLQ LAV
Sbjct: 703 PVPRLVVCDQYGSQARFLLAKLNPSVTYNSDNPPPPGGDVIFTDDVSFEVFMDHLQRLAV 762
Query: 756 Q 756
Q
Sbjct: 763 Q 763
>Os11g0433500 Similar to Protein transport protein Sec23A (SEC23-related protein
A)
Length = 351
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/351 (49%), Positives = 231/351 (65%), Gaps = 8/351 (2%)
Query: 415 VKICGALGPCISLHRKNSSVSDKEIGEGGTNYWKMSTVDSKTCIVFFFRVDCSHNTEPPT 474
+K+ G +GPC SL +K + +D +G+G T WKM +D T + FF V S + P
Sbjct: 1 IKVQGIIGPCTSLEKKGALCADTVVGQGNTTAWKMCGLDRNTSLTVFFDVSPSERSSQPG 60
Query: 475 ----VFFIQFMTRYRHGDGSYRLRVTTVARRW--AGPRSPEIAAGFDQEXXXXXXXXXXX 528
+IQF+T Y+H +G R+RVTT+ R+W + E+ GFDQE
Sbjct: 61 HQNPDLYIQFVTSYQHPEGQMRIRVTTICRKWVDGSTNTEELVEGFDQETAAVVLARYIS 120
Query: 529 XXXETYHVRDVIRWLDKMLIRFTAKFGNYVPEDPSTFRLSTNFSLYPQFMYYLRRSQFID 588
E D RWLD+ LIR ++FG+Y +DPS+F L +NFSL+PQFM+ LRRSQF+
Sbjct: 121 LKMEMEEEFDATRWLDRSLIRLCSRFGDYRKDDPSSFSLHSNFSLFPQFMFNLRRSQFVQ 180
Query: 589 VFNSSPDETAFFRLMLNREGVVGSLIMIQPTLFQYSFDGPPIPVLLDVSSISPDVILLFD 648
VFN+SPDETA+FR++LNRE + S+ MIQP+L +SFD PP PV LDV+SI+ D ILL D
Sbjct: 181 VFNNSPDETAYFRMLLNRESITNSVAMIQPSLISFSFDLPPSPVFLDVASIAADRILLLD 240
Query: 649 SYFYIVIHYGSKIAQWRKLGYHKDPNHENLRKLLEAPEVDAEALLVDRFPVPKLIKCDQH 708
+YF +VI +G IAQWR +GY P H+ +LL+AP +A+ ++ RFP P+L+ CDQH
Sbjct: 241 AYFSVVIFHGMTIAQWRNMGYQNQPEHQQFAQLLQAPHEEAQIIIKGRFPAPRLVVCDQH 300
Query: 709 GSQARFLLARLNPSVTQKT--QLSDGSEVIFTDDVSLQVFIEHLQELAVQG 757
GSQARFLLA+LNPS T + + GS++IFTDDVS QVF EHLQ LAVQ
Sbjct: 301 GSQARFLLAKLNPSATYNSAHDVPPGSDIIFTDDVSFQVFCEHLQRLAVQS 351
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,298,019
Number of extensions: 959603
Number of successful extensions: 2016
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2001
Number of HSP's successfully gapped: 3
Length of query: 757
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 649
Effective length of database: 11,396,689
Effective search space: 7396451161
Effective search space used: 7396451161
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 160 (66.2 bits)