BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0734500 Os03g0734500|AK108001
(104 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0734500 Conserved hypothetical protein 123 4e-29
Os10g0417300 88 2e-18
Os10g0417200 87 2e-18
Os07g0185900 Conserved hypothetical protein 64 3e-11
>Os03g0734500 Conserved hypothetical protein
Length = 104
Score = 123 bits (308), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/104 (62%), Positives = 65/104 (62%)
Query: 1 MSRYVELLDMGVRVAARFHSHCPQTARMYYKPPQXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MSRYVELLDMGVRVAARFHSHCPQTARMYYKPPQ
Sbjct: 1 MSRYVELLDMGVRVAARFHSHCPQTARMYYKPPQTTTTADGRRRRGDGAAGKQAAAGFDA 60
Query: 61 XXXXXXXXXXXXXGEELGGFRATAPSGFDFEFDTAQAVVYDVVA 104
GEELGGFRATAPSGFDFEFDTAQAVVYDVVA
Sbjct: 61 VSSATAARPFAAAGEELGGFRATAPSGFDFEFDTAQAVVYDVVA 104
>Os10g0417300
Length = 105
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 2 SRYVELLDMGVRVAARFHSHCPQTARMYYKPPQXXXXXXXXXXXXXXXXXXXXXXXXXXX 61
SRYVE+LDMGVR+AARFHSHCP TARMYYKPPQ
Sbjct: 3 SRYVEMLDMGVRIAARFHSHCPHTARMYYKPPQTTADHGGAAAGKQVVAAGFRFEAVSSS 62
Query: 62 XXXXXXXXXXXXGEELGGFRATAPSGFDFEFDTAQ 96
E GFRATAPSGFDFEFDTAQ
Sbjct: 63 SAGAMAAAAAW---EDRGFRATAPSGFDFEFDTAQ 94
>Os10g0417200
Length = 110
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 1 MSRYVELLDMGVRVAARFHSHCPQTARMYYKPPQXXXXXXXXXXXXXXXXXXXXXX---X 57
MSRYVE+LDMGVRVAARFHSHCP TARMYYKPPQ
Sbjct: 1 MSRYVEMLDMGVRVAARFHSHCPHTARMYYKPPQTTADHGGRGDGGAAAGKQVAAGFRFE 60
Query: 58 XXXXXXXXXXXXXXXXGEELGGFRATAPSGFDFEFDTAQA 97
E GF ATAPSGFDFEFDTAQA
Sbjct: 61 AVTSSSAGAMAVAAAAAWEDRGFGATAPSGFDFEFDTAQA 100
>Os07g0185900 Conserved hypothetical protein
Length = 80
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/30 (90%), Positives = 29/30 (96%)
Query: 1 MSRYVELLDMGVRVAARFHSHCPQTARMYY 30
M +YVELLDMGVR+AARFHSHCPQTARMYY
Sbjct: 1 MGKYVELLDMGVRIAARFHSHCPQTARMYY 30
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.137 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,243,797
Number of extensions: 38212
Number of successful extensions: 81
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 5
Length of query: 104
Length of database: 17,035,801
Length adjustment: 72
Effective length of query: 32
Effective length of database: 13,276,393
Effective search space: 424844576
Effective search space used: 424844576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)