BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0734200 Os03g0734200|AK106537
         (92 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0734200  Hypothetical protein                                114   1e-26
Os03g0734100  Conserved hypothetical protein                       69   1e-12

>Os03g0734200 Hypothetical protein
          Length = 92

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/65 (86%), Positives = 56/65 (86%)

Query: 28 EMXXXXXXXXXDCSTVRCIQGGYITCKNYPGKKLDGCVCLCAPTDGERCVLHLHDGSSYK 87
          EM         DCSTVRCIQGGYITCKNYPGKKLDGCVCLCAPTDGERCVLHLHDGSSYK
Sbjct: 28 EMAGAATAAAADCSTVRCIQGGYITCKNYPGKKLDGCVCLCAPTDGERCVLHLHDGSSYK 87

Query: 88 CRAPN 92
          CRAPN
Sbjct: 88 CRAPN 92



>Os03g0734100 Conserved hypothetical protein
          Length = 82

 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 34/47 (72%)

Query: 42 TVRCIQGGYITCKNYPGKKLDGCVCLCAPTDGERCVLHLHDGSSYKC 88
          +V CIQGGYITC NYP +KLDGC C CAP DG+ CVLHL  G    C
Sbjct: 32 SVVCIQGGYITCDNYPYQKLDGCACECAPKDGQNCVLHLEHGPPSNC 78



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.141    0.501 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,607,586
Number of extensions: 91219
Number of successful extensions: 174
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 3
Length of query: 92
Length of database: 17,035,801
Length adjustment: 61
Effective length of query: 31
Effective length of database: 13,850,747
Effective search space: 429373157
Effective search space used: 429373157
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)