BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0732000 Os03g0732000|Os03g0732000
         (482 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0732000  Similar to Isopentenyl/dimethylallyl diphospha...   894   0.0  
Os03g0731900  Similar to Isopentenyl/dimethylallyl diphospha...   589   e-168

>Os03g0732000 Similar to Isopentenyl/dimethylallyl diphosphate synthase
           (Fragment)
          Length = 482

 Score =  894 bits (2311), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/482 (91%), Positives = 439/482 (91%)

Query: 1   MAAFARPGHHXXXXXXXXXXXXXXXXXXXXNHLAQRRRGTPRRHXXXXXXXXXXXXXXXX 60
           MAAFARPGHH                    NHLAQRRRGTPRRH                
Sbjct: 1   MAAFARPGHHLPLVLPPLPQPPATTTSLSLNHLAQRRRGTPRRHVVVVSSAGGGGSSSPP 60

Query: 61  XXXXXXXNFDKHEYRRRMIRQGNYNRKSFGHEILGAINLEYTSELISEMERNGGEYVTMD 120
                  NFDKHEYRRRMIRQGNYNRKSFGHEILGAINLEYTSELISEMERNGGEYVTMD
Sbjct: 61  APDDDPGNFDKHEYRRRMIRQGNYNRKSFGHEILGAINLEYTSELISEMERNGGEYVTMD 120

Query: 121 GLVRLILAEAHGFCLGVDNAVRLAYDARVKFPDRRLWLTNQIIHNPTVSERLDEMGIKII 180
           GLVRLILAEAHGFCLGVDNAVRLAYDARVKFPDRRLWLTNQIIHNPTVSERLDEMGIKII
Sbjct: 121 GLVRLILAEAHGFCLGVDNAVRLAYDARVKFPDRRLWLTNQIIHNPTVSERLDEMGIKII 180

Query: 181 PVVSGVKDLSVVEDGDVVIFPAFGFTVDEMVTLNRKNVHIVDTTCPLVLKVVHMTERHIK 240
           PVVSGVKDLSVVEDGDVVIFPAFGFTVDEMVTLNRKNVHIVDTTCPLVLKVVHMTERHIK
Sbjct: 181 PVVSGVKDLSVVEDGDVVIFPAFGFTVDEMVTLNRKNVHIVDTTCPLVLKVVHMTERHIK 240

Query: 241 GNYTTIIHGKYAHEETVATASFADKYIIVKDITEAKYVCDYILEGQLDGSSSTKEKFLKK 300
           GNYTTIIHGKYAHEETVATASFADKYIIVKDITEAKYVCDYILEGQLDGSSSTKEKFLKK
Sbjct: 241 GNYTTIIHGKYAHEETVATASFADKYIIVKDITEAKYVCDYILEGQLDGSSSTKEKFLKK 300

Query: 301 FRYAVSPGFDPDIDLERVGVVNQTTMLKGETKEIGILIEQTMMSKYGLDQNNKQEHFVRV 360
           FRYAVSPGFDPDIDLERVGVVNQTTMLKGETKEIGILIEQTMMSKYGLDQNNKQEHFVRV
Sbjct: 301 FRYAVSPGFDPDIDLERVGVVNQTTMLKGETKEIGILIEQTMMSKYGLDQNNKQEHFVRV 360

Query: 361 GTICNATQERQDAMYKLVEKEVDLILVVGGWNSSNTSHLQEIGELSGIPSYWVDGEQRIG 420
           GTICNATQERQDAMYKLVEKEVDLILVVGGWNSSNTSHLQEIGELSGIPSYWVDGEQRIG
Sbjct: 361 GTICNATQERQDAMYKLVEKEVDLILVVGGWNSSNTSHLQEIGELSGIPSYWVDGEQRIG 420

Query: 421 PGNKISYKQKNGELVEKDKWLPHGAITIGVTSGASTPDKVVEDVLQKVFEIKRQELGEAT 480
           PGNKISYKQKNGELVEKDKWLPHGAITIGVTSGASTPDKVVEDVLQKVFEIKRQELGEAT
Sbjct: 421 PGNKISYKQKNGELVEKDKWLPHGAITIGVTSGASTPDKVVEDVLQKVFEIKRQELGEAT 480

Query: 481 EQ 482
           EQ
Sbjct: 481 EQ 482



>Os03g0731900 Similar to Isopentenyl/dimethylallyl diphosphate synthase
           (Fragment)
          Length = 459

 Score =  589 bits (1518), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 282/413 (68%), Positives = 343/413 (83%), Gaps = 6/413 (1%)

Query: 69  FDKHEYRRRMIRQGNYNRKSFGH--EILGAINLEYTSELISEMERNGGEYVTMDGLVRLI 126
           FDK ++R  + R  NYNRK FGH  E L  ++ EYTS++I  ++ NG ++    G V + 
Sbjct: 50  FDKKQFRHNLTRSDNYNRKGFGHKKETLELMSQEYTSDVIKTLKENGNQHTW--GPVTVK 107

Query: 127 LAEAHGFCLGVDNAVRLAYDARVKFPDRRLWLTNQIIHNPTVSERLDEMGIKIIPVVSGV 186
           LAEA+GFC GV+ AV++AY+AR +FPD R+WLTN+IIHNPTV++RL++MG++ IPV +G+
Sbjct: 108 LAEAYGFCWGVERAVQIAYEARKQFPDDRIWLTNEIIHNPTVNKRLEDMGVQNIPVDAGI 167

Query: 187 KDLSVVEDGDVVIFPAFGFTVDEMVTLNRKNVHIVDTTCPLVLKVVHMTERHIKGNYTTI 246
           KD  VVE GDVV+ PAFG  V+EM TLN K V IVDTTCP V KV +M E+H KG+YT+I
Sbjct: 168 KDFDVVEQGDVVVLPAFGAAVEEMYTLNEKKVQIVDTTCPWVSKVWNMVEKHKKGDYTSI 227

Query: 247 IHGKYAHEETVATASFADKYIIVKDITEAKYVCDYILEGQLDGSSSTKEKFLKKFRYAVS 306
           IHGKY+HEETVATASFA  YIIVK+I EA YVCDYIL GQLDGSSSTKE+FL+KF+ AVS
Sbjct: 228 IHGKYSHEETVATASFAGTYIIVKNIAEASYVCDYILGGQLDGSSSTKEEFLEKFKNAVS 287

Query: 307 PGFDPDIDLERVGVVNQTTMLKGETKEIGILIEQTMMSKYGLDQNNKQEHFVRVGTICNA 366
           PGFDPD+DL +VG+ NQTTMLKGET+EIG L+E+TMM ++G++  N  +HF+   TIC+A
Sbjct: 288 PGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRRFGVE--NVNDHFIAFNTICDA 345

Query: 367 TQERQDAMYKLVEKEVDLILVVGGWNSSNTSHLQEIGELSGIPSYWVDGEQRIGPGNKIS 426
           TQERQDAMY+LV+++VDLILVVGGWNSSNTSHLQEIGELSGIPSYW+D EQRIGPGNKIS
Sbjct: 346 TQERQDAMYQLVKEKVDLILVVGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKIS 405

Query: 427 YKQKNGELVEKDKWLPHGAITIGVTSGASTPDKVVEDVLQKVFEIKRQELGEA 479
           YK  +GELVEK+ WLP G ITIGVTSGASTPDKVVED LQKVFEIKRQE+ +A
Sbjct: 406 YKLNHGELVEKENWLPEGPITIGVTSGASTPDKVVEDALQKVFEIKRQEVLQA 458



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,523,423
Number of extensions: 583352
Number of successful extensions: 1222
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1217
Number of HSP's successfully gapped: 2
Length of query: 482
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 377
Effective length of database: 11,553,331
Effective search space: 4355605787
Effective search space used: 4355605787
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)