BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0729300 Os03g0729300|AK108483
(259 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0729300 Thioredoxin-like fold domain containing protein 420 e-118
Os03g0729200 Thioredoxin-like fold domain containing protein 269 2e-72
AK067798 174 4e-44
Os03g0284600 Thioredoxin fold domain containing protein 87 1e-17
>Os03g0729300 Thioredoxin-like fold domain containing protein
Length = 259
Score = 420 bits (1080), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/259 (82%), Positives = 213/259 (82%)
Query: 1 METVXXXXXXXXXXXXXXXXXXXXXVNRAVVPAASRPRGGRLCCRRSLTXXXXXXXXXXX 60
METV VNRAVVPAASRPRGGRLCCRRSLT
Sbjct: 1 METVASLSRAALAGAPAATRATASPVNRAVVPAASRPRGGRLCCRRSLTAVSAAAGASPP 60
Query: 61 XXXXXXXXXXXXXXWDALGGVSVLAAGTGEAVQLRDLWDPTEGVAVVALLRHFGCFCCWE 120
WDALGGVSVLAAGTGEAVQLRDLWDPTEGVAVVALLRHFGCFCCWE
Sbjct: 61 VSPSPSPDGGSPGVWDALGGVSVLAAGTGEAVQLRDLWDPTEGVAVVALLRHFGCFCCWE 120
Query: 121 LASVLKESMAKFDAAGAKLIAIGVGTPDKARILADGLPFPVDSLYADPERKAYDVLGLYH 180
LASVLKESMAKFDAAGAKLIAIGVGTPDKARILADGLPFPVDSLYADPERKAYDVLGLYH
Sbjct: 121 LASVLKESMAKFDAAGAKLIAIGVGTPDKARILADGLPFPVDSLYADPERKAYDVLGLYH 180
Query: 181 GLGRTLISPAKMYSGLNSIKKVTKNYTLKGTPADLTGILQQGGMLVFRGKELLYSWKDKG 240
GLGRTLISPAKMYSGLNSIKKVTKNYTLKGTPADLTGILQQGGMLVFRGKELLYSWKDKG
Sbjct: 181 GLGRTLISPAKMYSGLNSIKKVTKNYTLKGTPADLTGILQQGGMLVFRGKELLYSWKDKG 240
Query: 241 TGDHAPLDDVLNACCNRTS 259
TGDHAPLDDVLNACCNRTS
Sbjct: 241 TGDHAPLDDVLNACCNRTS 259
>Os03g0729200 Thioredoxin-like fold domain containing protein
Length = 258
Score = 269 bits (687), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 125/183 (68%), Positives = 151/183 (82%), Gaps = 2/183 (1%)
Query: 76 DALGGVSVLAAGTGEAVQLRDLWDPTEGVAVVALLRHFGCFCCWELASVLKESMAKFDAA 135
DALGGV++ +A TGE V RDLWD EG+AVVALLRHFGC CCWELASVL+++ +FD+A
Sbjct: 72 DALGGVAIYSAATGEPVLFRDLWDQNEGMAVVALLRHFGCPCCWELASVLRDTKERFDSA 131
Query: 136 GAKLIAIGVGTPDKARILADGLPFPVDSLYADPERKAYDVLGLYHGLGRTLISP--AKMY 193
G KLIA+GVGTPDKARILA+ LPFP+D LYADPERKAYD+LGLY G+GRT +P A ++
Sbjct: 132 GVKLIAVGVGTPDKARILAERLPFPLDYLYADPERKAYDLLGLYFGIGRTFFNPASASVF 191
Query: 194 SGLNSIKKVTKNYTLKGTPADLTGILQQGGMLVFRGKELLYSWKDKGTGDHAPLDDVLNA 253
S +S+K+ KNYT++ TP D +LQQGGM VFRGKEL+Y+ KD+GTGDHAPLDDVLN
Sbjct: 192 SRFDSLKEAVKNYTIEATPDDRASVLQQGGMFVFRGKELIYARKDEGTGDHAPLDDVLNI 251
Query: 254 CCN 256
CC
Sbjct: 252 CCK 254
>AK067798
Length = 690
Score = 174 bits (442), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 80/117 (68%), Positives = 97/117 (82%), Gaps = 2/117 (1%)
Query: 141 AIGVGTPDKARILADGLPFPVDSLYADPERKAYDVLGLYHGLGRTLISPAK--MYSGLNS 198
A+GVGTPDKARILA+ LPFP+D LYADPERKAYD+LGLY G+GRT +PA ++S +S
Sbjct: 569 AVGVGTPDKARILAERLPFPLDYLYADPERKAYDLLGLYFGIGRTFFNPASASVFSRFDS 628
Query: 199 IKKVTKNYTLKGTPADLTGILQQGGMLVFRGKELLYSWKDKGTGDHAPLDDVLNACC 255
+K+ KNYT++ TP D +LQQGGM VFRGKEL+Y+ KD+GTGDHAPLDDVLN CC
Sbjct: 629 LKEAVKNYTIEATPDDRASVLQQGGMFVFRGKELIYARKDEGTGDHAPLDDVLNICC 685
>Os03g0284600 Thioredoxin fold domain containing protein
Length = 251
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 92/188 (48%), Gaps = 17/188 (9%)
Query: 77 ALGGVSVLAAGTGEAVQLRDLWDPTEGVAVVALLRHFGCFCCWELASVLKESMAKFDAAG 136
+L GV V +G+AV + DLW + A+VA RHFGC C + A +L +AAG
Sbjct: 73 SLQGVEVFDL-SGKAVPVVDLWKDRK--AIVAFARHFGCVLCRKRADLLAAKQDAMEAAG 129
Query: 137 AKLIAIGVGTPDKARILADGLPFPVDSLYADPERKAYDVLGLYHGLGRTLISPAKMYSGL 196
L+ IG GT ++A+ D F + +YADP +Y+ L GL T A GL
Sbjct: 130 VALVLIGPGTVEQAKAFYDQTKFKGE-VYADPSHSSYNALEFAFGLFSTFTPSA----GL 184
Query: 197 NSIKKVTKNY------TLKGTPADLTGILQQGGMLVFRG--KELLYSWKDKGTGDHAPLD 248
I+ + Y + + T G QGG+LV +LY KDK GD +D
Sbjct: 185 KIIQLYMEGYRQDWELSFEKT-TRTKGGWYQGGLLVAGPGIDNILYIHKDKEAGDDPDMD 243
Query: 249 DVLNACCN 256
DVL ACC+
Sbjct: 244 DVLKACCS 251
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,798,205
Number of extensions: 306486
Number of successful extensions: 685
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 680
Number of HSP's successfully gapped: 4
Length of query: 259
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 160
Effective length of database: 11,866,615
Effective search space: 1898658400
Effective search space used: 1898658400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)