Os03g0284600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thioredoxin fold domain containing protein.
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Os03g0284600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thioredoxin fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.76 | 0.372 | 13.6 | -0.646 | 2.28 | -0.868 | 1.26 | 0.419 | -0.309 | 8.36 | 53.67 | 870 | -- | -- |
| 62.92 | 0.369 | 13.6 | -0.615 | 2.26 | -0.849 | 1.39 | -- | -0.303 | 8.37 | 53 | 889 | -- | -- |
| 66.27 | 0.379 | 13.6 | -0.683 | 2.27 | -0.867 | -- | 1.38 | -0.321 | 8.34 | 53.7 | 868 | -- | -- |
| 69.14 | 0.387 | 13.6 | -0.575 | 2.24 | -0.787 | -- | -- | -0.301 | 8.33 | 52.84 | 889 | -- | -- |
| 216.47 | 0.685 | 13.6 | -0.638 | -- | 1.68 | -- | 1.15 | -0.209 | -- | 57.57 | 630 | -- | -- |
| 73.45 | 0.402 | 13.6 | -0.576 | 1.95 | -- | 1.25 | -- | -0.28 | 8.17 | -- | -- | -- | -- |
| 78.2 | 0.414 | 13.6 | -0.541 | 1.95 | -- | -- | -- | -0.282 | 8.11 | -- | -- | -- | -- |
| 209.26 | 0.674 | 13.6 | -0.541 | -- | 1.58 | -- | -- | -0.152 | -- | 67 | 606 | -- | -- |
| 77.09 | 0.409 | 13.6 | -- | 2.26 | -0.804 | -- | -- | -0.275 | 8.4 | 69.77 | 885 | -- | -- |
| 287.95 | 0.793 | 13.6 | -0.524 | -- | -- | -- | -- | -0.258 | -- | -- | -- | -- | -- |
| 85.92 | 0.434 | 13.6 | -- | 1.95 | -- | -- | -- | -0.221 | 8.13 | -- | -- | -- | -- |
| 216.71 | 0.686 | 13.6 | -- | -- | 1.59 | -- | -- | -0.0991 | -- | 66 | 610 | -- | -- |
| 295.2 | 0.802 | 13.6 | -- | -- | -- | -- | -- | -0.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.59 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 3 | 61.63 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 7 |
| 9 | 61.99 | humidity | 90 | 720 | < th | dose dependent | sin | 16 | NA |
| 15 | 62.10 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 19 | 62.16 | humidity | 90 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 25 | 62.22 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 27 | 62.25 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 4 |
| 35 | 62.28 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 73 | 62.54 | humidity | 50 | 720 | > th | dose dependent | sin | 16 | NA |
| 78 | 62.55 | humidity | 60 | 720 | > th | dose dependent | rect. | 12 | 14 |
| 103 | 62.66 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 9 |
| 120 | 62.72 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 132 | 62.74 | humidity | 80 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 145 | 62.76 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 165 | 62.82 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 18 |
| 174 | 62.84 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 16 |
| 189 | 62.87 | humidity | 50 | 720 | > th | dose dependent | rect. | 12 | 22 |
| 193 | 62.89 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 277 | 63.10 | humidity | 80 | 720 | < th | dose independent | rect. | 17 | 1 |
| 321 | 63.19 | radiation | 10 | 1440 | < th | dose dependent | sin | 19 | NA |
| 383 | 63.30 | humidity | 90 | 720 | < th | dose independent | rect. | 19 | 5 |
| 396 | 63.33 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 411 | 63.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 412 | 63.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 3 |
| 413 | 63.37 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 4 |
| 424 | 63.38 | humidity | 50 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 425 | 63.39 | humidity | 80 | 720 | < th | dose independent | rect. | 17 | 3 |
| 432 | 63.42 | humidity | 80 | 720 | < th | dose independent | rect. | 15 | 5 |
| 466 | 63.47 | humidity | 90 | 720 | < th | dose independent | rect. | 19 | 3 |
| 467 | 63.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 4 |
| 478 | 63.49 | humidity | 50 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 496 | 63.51 | humidity | 50 | 720 | > th | dose dependent | rect. | 5 | 21 |
| 510 | 63.54 | humidity | 90 | 720 | < th | dose independent | rect. | 17 | 7 |
| 516 | 63.55 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 539 | 63.59 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 540 | 63.59 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 548 | 63.61 | humidity | 90 | 720 | < th | dose independent | rect. | 21 | 1 |
| 560 | 63.63 | humidity | 50 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 565 | 63.64 | humidity | 50 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 599 | 63.69 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 9 |
| 623 | 63.72 | humidity | 50 | 720 | > th | dose dependent | rect. | 5 | 16 |
| 627 | 63.73 | humidity | 80 | 720 | > th | dose independent | rect. | 17 | 2 |
| 629 | 63.73 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 8 |
| 639 | 63.73 | humidity | 50 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 673 | 63.78 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 680 | 63.80 | humidity | 50 | 720 | > th | dose dependent | rect. | 5 | 18 |
| 684 | 63.81 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 2 |
| 699 | 63.83 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 7 |
| 713 | 63.84 | humidity | 50 | 720 | > th | dose dependent | no | NA | NA |
| 725 | 63.86 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 779 | 63.92 | humidity | 50 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 797 | 63.95 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 4 |
| 810 | 63.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 839 | 63.99 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 855 | 64.00 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 868 | 64.01 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 7 |
| 873 | 64.01 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 884 | 64.03 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 888 | 64.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 896 | 64.03 | humidity | 50 | 720 | > th | dose dependent | rect. | 7 | 19 |
| 899 | 64.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 991 | 64.14 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 23 |