BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0284600 Os03g0284600|AK110712
         (251 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G37240.1  | chr2:15640235-15641720 REVERSE LENGTH=249          270   4e-73
AT5G65840.1  | chr5:26344097-26346057 REVERSE LENGTH=276          101   4e-22

>AT2G37240.1 | chr2:15640235-15641720 REVERSE LENGTH=249
          Length = 248

 Score =  270 bits (691), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 123/179 (68%), Positives = 148/179 (82%)

Query: 73  SLQGVEVFDLSGKAVPVVDLWKDRKAIVAFARHFGCVLCRKRADLLAAKQDAMEAAGVAL 132
           SL  V+V DL G  +P+ DLWKDRKA+VAFARHFGCVLCRKRA  LA K+D M+A+GVAL
Sbjct: 70  SLDTVKVLDLRGNEIPISDLWKDRKAVVAFARHFGCVLCRKRAAYLAEKKDVMDASGVAL 129

Query: 133 VLIGPGTVEQAKAFYDQTKFKGEVYADPSHSSYNALEFAFGLFSTFTPSAGLKIIQLYME 192
           VLIGPG+++QA  F +QTKFKGEVYADP+H+SY ALEF  G+  TFTP A +KI++ YME
Sbjct: 130 VLIGPGSIDQANTFVEQTKFKGEVYADPNHASYEALEFVSGVSVTFTPKAAMKILESYME 189

Query: 193 GYRQDWELSFEKTTRTKGGWYQGGLLVAGPGIDNILYIHKDKEAGDDPDMDDVLKACCS 251
           GYRQDW+LSF K T  +GGW QGG+LVAGPG DNI YI KDKEAGDDP ++++LKACC+
Sbjct: 190 GYRQDWKLSFMKDTVERGGWQQGGILVAGPGKDNISYIRKDKEAGDDPPVEEILKACCA 248



>AT5G65840.1 | chr5:26344097-26346057 REVERSE LENGTH=276
          Length = 275

 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 86/180 (47%), Gaps = 4/180 (2%)

Query: 74  LQGVEVFDLSGKAVPVVDLW--KDRKAIVAFARHFGCVLCRKRADLLAAKQDAMEAAGVA 131
           L  V +F  SG+ V   DLW  KD  A V   RHFGCV C + A  L   +   +AAGV 
Sbjct: 92  LGDVSIFTASGQRVQFSDLWDQKDGIAAVVLLRHFGCVCCWELATALKEAKPRFDAAGVK 151

Query: 132 LVLIGPGTVEQAKAFYDQTKFKGE-VYADPSHSSYNALEFAFGLFSTFTPSAGLKIIQLY 190
           L+ +G GT ++A+    +  F  E +YADP   +Y+ L   FGL  TF   A  K+   +
Sbjct: 152 LIAVGVGTPDKARILATRLPFPMECLYADPERKAYDVLGLYFGLGRTFFNPASTKVFSRF 211

Query: 191 MEGYRQDWELSFEKTTRTKGGWYQGGLLVAGPGIDNILYIHKDKEAGDDPDMDDVLKACC 250
            E        + E T   +    Q G      G   +LY  KD+  GD P +DDV+  CC
Sbjct: 212 SEIREATKNYTIEATPEDRSSVLQQGGTFVFRG-KKLLYGRKDEGTGDHPSLDDVINVCC 270



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,443,349
Number of extensions: 162428
Number of successful extensions: 312
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 2
Length of query: 251
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 155
Effective length of database: 8,474,633
Effective search space: 1313568115
Effective search space used: 1313568115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)