Os03g0729300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thioredoxin-like fold domain containing protein.
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Os03g0729300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thioredoxin-like fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.18 | 0.376 | 12.8 | -1.23 | 1.04 | 0.649 | -0.0418 | 3.04 | -0.142 | 7.84 | 70.54 | 1210 | -- | -- |
| 75.31 | 0.404 | 12.8 | -0.924 | 1.01 | 0.752 | 0.199 | -- | -0.0969 | 7.61 | 66 | 1189 | -- | -- |
| 64.19 | 0.373 | 12.8 | -1.23 | 1.04 | 0.651 | -- | 3.05 | -0.142 | 7.85 | 70.84 | 1213 | -- | -- |
| 75.03 | 0.403 | 12.8 | -0.901 | 1.07 | 0.766 | -- | -- | -0.0829 | 7.91 | 65.04 | 1274 | -- | -- |
| 84.82 | 0.429 | 12.8 | -1.08 | -- | 1.38 | -- | 2.13 | -0.0697 | -- | 70 | 733 | -- | -- |
| 84.6 | 0.431 | 12.8 | -0.915 | 1.08 | -- | 0.404 | -- | -0.16 | 8.38 | -- | -- | -- | -- |
| 85.1 | 0.432 | 12.8 | -0.903 | 1.08 | -- | -- | -- | -0.16 | 8.32 | -- | -- | -- | -- |
| 92.24 | 0.447 | 12.8 | -0.886 | -- | 1.43 | -- | -- | -0.0476 | -- | 67.24 | 725 | -- | -- |
| 95.97 | 0.456 | 12.8 | -- | 1.05 | 0.777 | -- | -- | -0.0284 | 7.85 | 62.08 | 1260 | -- | -- |
| 149.76 | 0.572 | 12.9 | -0.896 | -- | -- | -- | -- | -0.149 | -- | -- | -- | -- | -- |
| 106.59 | 0.483 | 12.8 | -- | 1.08 | -- | -- | -- | -0.0597 | 8.38 | -- | -- | -- | -- |
| 112.85 | 0.495 | 12.8 | -- | -- | 1.45 | -- | -- | 0.043 | -- | 66 | 733 | -- | -- |
| 170.94 | 0.61 | 12.8 | -- | -- | -- | -- | -- | -0.0492 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.00 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 2 | 53.46 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 3 | 53.46 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 4 | 55.43 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 5 | 55.76 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 13 | 56.73 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 14 | 56.74 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 15 | 56.84 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 18 | 56.95 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 11 |
| 19 | 57.02 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 20 | 57.02 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 7 |
| 22 | 57.21 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 23 | 57.21 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 24 | 57.32 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 25 | 57.32 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 26 | 57.39 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 7 |
| 31 | 57.65 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 34 | 57.72 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 9 |
| 35 | 57.81 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 36 | 57.81 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 45 | 58.15 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 11 |
| 46 | 58.20 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 6 |
| 49 | 58.26 | wind | 9.0 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 50 | 58.27 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 52 | 58.27 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 12 |
| 56 | 58.41 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 58 | 58.41 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 4 |
| 60 | 58.42 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 62 | 58.52 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 68 | 58.76 | wind | 9.0 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 69 | 58.76 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 19 |
| 73 | 58.86 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 74 | 58.92 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 85 | 59.15 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 9 |
| 87 | 59.15 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 9 |
| 101 | 59.36 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 109 | 59.48 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 4 |
| 124 | 59.77 | wind | 9.0 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 128 | 59.78 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 137 | 59.95 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 139 | 60.00 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 151 | 60.18 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 19 |
| 162 | 60.27 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 167 | 60.32 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 12 |
| 169 | 60.34 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 176 | 60.36 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 22 |
| 180 | 60.39 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 181 | 60.39 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 188 | 60.44 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 0 | NA |
| 202 | 60.50 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 214 | 60.52 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 14 |
| 218 | 60.54 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 8 |
| 225 | 60.55 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 17 |
| 250 | 60.62 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 269 | 60.69 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 270 | 60.69 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 271 | 60.69 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 279 | 60.70 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 283 | 60.72 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 8 |
| 285 | 60.72 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 307 | 60.79 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 341 | 60.94 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 343 | 60.95 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 8 |
| 370 | 61.03 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 371 | 61.03 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 3 |
| 372 | 61.03 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 373 | 61.04 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 383 | 61.09 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 398 | 61.15 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 399 | 61.15 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 402 | 61.16 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 23 | 8 |
| 409 | 61.19 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 414 | 61.21 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 23 | 16 |
| 425 | 61.25 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 435 | 61.30 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 1 | 14 |
| 444 | 61.34 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 19 |
| 450 | 61.36 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 470 | 61.43 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 494 | 61.50 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 569 | 61.70 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 576 | 61.71 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 579 | 61.73 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 4 | NA |
| 602 | 61.79 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 604 | 61.80 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 620 | 61.85 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 627 | 61.85 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 12 |
| 647 | 61.90 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 22 | 15 |
| 656 | 61.93 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 762 | 62.15 | wind | 3.0 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 769 | 62.16 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 15 | 6 |
| 777 | 62.17 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 15 | 9 |
| 782 | 62.18 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 829 | 62.27 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 850 | 62.30 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 12 |
| 852 | 62.30 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 860 | 62.31 | wind | 9.0 | 14400 | > th | dose independent | rect. | 22 | 14 |
| 866 | 62.32 | wind | 1.0 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 886 | 62.35 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 902 | 62.37 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 919 | 62.39 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 941 | 62.43 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 967 | 62.46 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 974 | 62.47 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 978 | 62.48 | humidity | 90.0 | 14400 | > th | dose independent | sin | 1 | NA |
| 988 | 62.49 | wind | 3.0 | 43200 | > th | dose independent | rect. | 23 | 10 |
| 992 | 62.49 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |