BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0729300 Os03g0729300|AK108483
         (259 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65840.1  | chr5:26344097-26346057 REVERSE LENGTH=276          253   6e-68
AT2G37240.1  | chr2:15640235-15641720 REVERSE LENGTH=249           88   4e-18

>AT5G65840.1 | chr5:26344097-26346057 REVERSE LENGTH=276
          Length = 275

 Score =  253 bits (646), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 118/185 (63%), Positives = 143/185 (77%), Gaps = 3/185 (1%)

Query: 76  DALGGVSVLAAGTGEAVQLRDLWDPTEGVAVVALLRHFGCFCCWELASVLKESMAKFDAA 135
           + LG VS+  A +G+ VQ  DLWD  +G+A V LLRHFGC CCWELA+ LKE+  +FDAA
Sbjct: 90  EILGDVSIFTA-SGQRVQFSDLWDQKDGIAAVVLLRHFGCVCCWELATALKEAKPRFDAA 148

Query: 136 GAKLIAIGVGTPDKARILADGLPFPVDSLYADPERKAYDVLGLYHGLGRTLISPA--KMY 193
           G KLIA+GVGTPDKARILA  LPFP++ LYADPERKAYDVLGLY GLGRT  +PA  K++
Sbjct: 149 GVKLIAVGVGTPDKARILATRLPFPMECLYADPERKAYDVLGLYFGLGRTFFNPASTKVF 208

Query: 194 SGLNSIKKVTKNYTLKGTPADLTGILQQGGMLVFRGKELLYSWKDKGTGDHAPLDDVLNA 253
           S  + I++ TKNYT++ TP D + +LQQGG  VFRGK+LLY  KD+GTGDH  LDDV+N 
Sbjct: 209 SRFSEIREATKNYTIEATPEDRSSVLQQGGTFVFRGKKLLYGRKDEGTGDHPSLDDVINV 268

Query: 254 CCNRT 258
           CC  T
Sbjct: 269 CCKAT 273



>AT2G37240.1 | chr2:15640235-15641720 REVERSE LENGTH=249
          Length = 248

 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 92/183 (50%), Gaps = 7/183 (3%)

Query: 76  DALGGVSVLAAGTGEAVQLRDLWDPTEGVAVVALLRHFGCFCCWELASVLKESMAKFDAA 135
           D+L  V VL    G  + + DLW   +  AVVA  RHFGC  C + A+ L E     DA+
Sbjct: 69  DSLDTVKVLDL-RGNEIPISDLWKDRK--AVVAFARHFGCVLCRKRAAYLAEKKDVMDAS 125

Query: 136 GAKLIAIGVGTPDKARILADGLPFPVDSLYADPERKAYDVLGLYHGLGRTLISPAKMYSG 195
           G  L+ IG G+ D+A    +   F    +YADP   +Y+ L    G+  T    A M   
Sbjct: 126 GVALVLIGPGSIDQANTFVEQTKFK-GEVYADPNHASYEALEFVSGVSVTFTPKAAMKIL 184

Query: 196 LNSIKKVTKNYTLKGTPADLT-GILQQGGMLVF-RGKE-LLYSWKDKGTGDHAPLDDVLN 252
            + ++   +++ L      +  G  QQGG+LV   GK+ + Y  KDK  GD  P++++L 
Sbjct: 185 ESYMEGYRQDWKLSFMKDTVERGGWQQGGILVAGPGKDNISYIRKDKEAGDDPPVEEILK 244

Query: 253 ACC 255
           ACC
Sbjct: 245 ACC 247



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,633,347
Number of extensions: 176804
Number of successful extensions: 344
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 2
Length of query: 259
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 163
Effective length of database: 8,474,633
Effective search space: 1381365179
Effective search space used: 1381365179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)