BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0719800 Os03g0719800|AK072482
(1128 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0719800 Phytochrome A 2224 0.0
Os03g0752100 Phytochrome C 1160 0.0
Os03g0309200 Similar to Phytochrome B 1066 0.0
>Os03g0719800 Phytochrome A
Length = 1128
Score = 2224 bits (5764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1082/1105 (97%), Positives = 1082/1105 (97%)
Query: 24 ILAQTTLDAELNAEYEEYGDSFDYSKLVEAQRTTGPEQQARSEKVIAYLHHIQRAKLIQP 83
ILAQTTLDAELNAEYEEYGDSFDYSKLVEAQRTTGPEQQARSEKVIAYLHHIQRAKLIQP
Sbjct: 24 ILAQTTLDAELNAEYEEYGDSFDYSKLVEAQRTTGPEQQARSEKVIAYLHHIQRAKLIQP 83
Query: 84 FGCLLALDEKTFNVIALSENAPEMLTTVSHAVPSVDDPPKLRIGTNVWSLFTDPGATALQ 143
FGCLLALDEKTFNVIALSENAPEMLTTVSHAVPSVDDPPKLRIGTNVWSLFTDPGATALQ
Sbjct: 84 FGCLLALDEKTFNVIALSENAPEMLTTVSHAVPSVDDPPKLRIGTNVWSLFTDPGATALQ 143
Query: 144 KALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCLVVDFEPVKPTEFPATAAGALQSYK 203
KALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCLVVDFEPVKPTEFPATAAGALQSYK
Sbjct: 144 KALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCLVVDFEPVKPTEFPATAAGALQSYK 203
Query: 204 LAAKAISKIQSLPGGSMEVLCNTVVKELFDLTGYDRVMAYKFHEDDHGEVFAEITKPGLE 263
LAAKAISKIQSLPGGSMEVLCNTVVKELFDLTGYDRVMAYKFHEDDHGEVFAEITKPGLE
Sbjct: 204 LAAKAISKIQSLPGGSMEVLCNTVVKELFDLTGYDRVMAYKFHEDDHGEVFAEITKPGLE 263
Query: 264 PYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSIKIIEDESLHLDISLCGSTLRAPHS 323
PYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSIKIIEDESLHLDISLCGSTLRAPHS
Sbjct: 264 PYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSIKIIEDESLHLDISLCGSTLRAPHS 323
Query: 324 CHLQYMENMNSIASLVMAXXXXXXXXXXXXGADQPAQQQKRKKLWGLLVCHHESPRYVPF 383
CHLQYMENMNSIASLVMA GADQPAQQQKRKKLWGLLVCHHESPRYVPF
Sbjct: 324 CHLQYMENMNSIASLVMAVVVNENEDDDEVGADQPAQQQKRKKLWGLLVCHHESPRYVPF 383
Query: 384 PLRYACEFLAQVFAVHVNKEFELERQVREKSILRMQTMLSDMLLRESSPLSIVSGTPNIM 443
PLRYACEFLAQVFAVHVNKEFELERQVREKSILRMQTMLSDMLLRESSPLSIVSGTPNIM
Sbjct: 384 PLRYACEFLAQVFAVHVNKEFELERQVREKSILRMQTMLSDMLLRESSPLSIVSGTPNIM 443
Query: 444 DLVKCDGAALLYGGKVWRLQNAPTESQIRDIAFWLSDVHRDSTGLSTDSLHDAGYPGAAA 503
DLVKCDGAALLYGGKVWRLQNAPTESQIRDIAFWLSDVHRDSTGLSTDSLHDAGYPGAAA
Sbjct: 444 DLVKCDGAALLYGGKVWRLQNAPTESQIRDIAFWLSDVHRDSTGLSTDSLHDAGYPGAAA 503
Query: 504 LGDMICGMAVAKINSKDILFWFRSHTAAEIRWGGAKHDPSDKDDSRRMHPRLSFKAFLEV 563
LGDMICGMAVAKINSKDILFWFRSHTAAEIRWGGAKHDPSDKDDSRRMHPRLSFKAFLEV
Sbjct: 504 LGDMICGMAVAKINSKDILFWFRSHTAAEIRWGGAKHDPSDKDDSRRMHPRLSFKAFLEV 563
Query: 564 VKMKSLPWNDYEMDAIHSLQLILRGTLNDDIKPTRAASLDNQVGDLKLDGLAELQAVTSE 623
VKMKSLPWNDYEMDAIHSLQLILRGTLNDDIKPTRAASLDNQVGDLKLDGLAELQAVTSE
Sbjct: 564 VKMKSLPWNDYEMDAIHSLQLILRGTLNDDIKPTRAASLDNQVGDLKLDGLAELQAVTSE 623
Query: 624 MVRLMETATVPILAVDSNGLVNGWNQKVAELTGLRVDEAIGRHILTVVEESSVPVVQRML 683
MVRLMETATVPILAVDSNGLVNGWNQKVAELTGLRVDEAIGRHILTVVEESSVPVVQRML
Sbjct: 624 MVRLMETATVPILAVDSNGLVNGWNQKVAELTGLRVDEAIGRHILTVVEESSVPVVQRML 683
Query: 684 YLALQGXXXXXXXXXXXTHGSKRDDGPVILVVNACASRDLHDHVVGVCFVAQDMTVHKLV 743
YLALQG THGSKRDDGPVILVVNACASRDLHDHVVGVCFVAQDMTVHKLV
Sbjct: 684 YLALQGKEEKEVKFEVKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFVAQDMTVHKLV 743
Query: 744 MDKFTRVEGDYKAIIHNPSPLIPPIFGADEFGWCSEWNAAMTKLTGWHRDEVINKMLLGE 803
MDKFTRVEGDYKAIIHNPSPLIPPIFGADEFGWCSEWNAAMTKLTGWHRDEVINKMLLGE
Sbjct: 744 MDKFTRVEGDYKAIIHNPSPLIPPIFGADEFGWCSEWNAAMTKLTGWHRDEVINKMLLGE 803
Query: 804 VFDSTNASCLVKNKDAFVSLCILINSALAGDETEKAPFSFFDRNGKYIECLLSVNRKVNA 863
VFDSTNASCLVKNKDAFVSLCILINSALAGDETEKAPFSFFDRNGKYIECLLSVNRKVNA
Sbjct: 804 VFDSTNASCLVKNKDAFVSLCILINSALAGDETEKAPFSFFDRNGKYIECLLSVNRKVNA 863
Query: 864 DGVITGVFCFIQVPSHELQHALHVQQASQQNALTKLKAYSYMRHAINNPLSGMLYSRKAL 923
DGVITGVFCFIQVPSHELQHALHVQQASQQNALTKLKAYSYMRHAINNPLSGMLYSRKAL
Sbjct: 864 DGVITGVFCFIQVPSHELQHALHVQQASQQNALTKLKAYSYMRHAINNPLSGMLYSRKAL 923
Query: 924 KNTGLNEEQMKEVNVADSCHRQLNKILSDLDQDSVMNKSSCLDLEMVEFVLQDVFVAAVS 983
KNTGLNEEQMKEVNVADSCHRQLNKILSDLDQDSVMNKSSCLDLEMVEFVLQDVFVAAVS
Sbjct: 924 KNTGLNEEQMKEVNVADSCHRQLNKILSDLDQDSVMNKSSCLDLEMVEFVLQDVFVAAVS 983
Query: 984 QVLITCQGKGIRVSCNLPERYMKQTVYGDGVRLQQILSDFLFVSVKFSPVGGSVEISCSL 1043
QVLITCQGKGIRVSCNLPERYMKQTVYGDGVRLQQILSDFLFVSVKFSPVGGSVEISCSL
Sbjct: 984 QVLITCQGKGIRVSCNLPERYMKQTVYGDGVRLQQILSDFLFVSVKFSPVGGSVEISCSL 1043
Query: 1044 TKNSIGENLHLIDLELRIKHQGKGVPADLLSQMYEDDNKEQSDEGMSLAVSRNLLRLMNG 1103
TKNSIGENLHLIDLELRIKHQGKGVPADLLSQMYEDDNKEQSDEGMSLAVSRNLLRLMNG
Sbjct: 1044 TKNSIGENLHLIDLELRIKHQGKGVPADLLSQMYEDDNKEQSDEGMSLAVSRNLLRLMNG 1103
Query: 1104 DVRHMREAGMSTFILSVELASAPAK 1128
DVRHMREAGMSTFILSVELASAPAK
Sbjct: 1104 DVRHMREAGMSTFILSVELASAPAK 1128
>Os03g0752100 Phytochrome C
Length = 1137
Score = 1160 bits (3001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/1110 (51%), Positives = 764/1110 (68%), Gaps = 16/1110 (1%)
Query: 22 ARILAQTTLDAELNAEYEEYGDSFDYSKLVEAQRTTGPEQQARSEKVIAYLHHIQRAKLI 81
AR++AQT +DA+L+AE+E FDYS V A +G A + V AYL ++QR + +
Sbjct: 24 ARVVAQTPMDAQLHAEFEGSQRHFDYSSSVGAANRSG----ATTSNVSAYLQNMQRGRFV 79
Query: 82 QPFGCLLALDEKTFNVIALSENAPEMLTTVSHAVPSVDDPPKLRIGTNVWSLFTDPGATA 141
QPFGCLLA+ +TF ++A SENA EML HAVP++D L +GT+V +LF A
Sbjct: 80 QPFGCLLAVHPETFALLAYSENAAEMLDLTPHAVPTIDQREALAVGTDVRTLFRSHSFVA 139
Query: 142 LQKALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCLVVDFEPVKPTEFPATAAGALQS 201
LQKA F DV+LLNPILV +TSGKPFYAI+HR LV+D EPV P + P TA GA++S
Sbjct: 140 LQKAATFGDVNLLNPILVHARTSGKPFYAIMHRIDVGLVIDLEPVNPVDLPVTATGAIKS 199
Query: 202 YKLAAKAISKIQSLPGGSMEVLCNTVVKELFDLTGYDRVMAYKFHEDDHGEVFAEITKPG 261
YKLAA+AI+++QSLP G++ +LC+ +V+E+ +LTGYDRVMAYKFHED+HGEV AE +
Sbjct: 200 YKLAARAIARLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVIAECKRSD 259
Query: 262 LEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSIKIIEDESLHLDISLCGSTLRAP 321
LEPYLGLHYPATDIPQA+RFLFMKNKVRMICDC A +KII+D+SL IS+CGSTLRAP
Sbjct: 260 LEPYLGLHYPATDIPQASRFLFMKNKVRMICDCSATPVKIIQDDSLTQPISICGSTLRAP 319
Query: 322 HSCHLQYMENMNSIASLVMAXXXXXXXXXXXXGADQPAQQQKRKKLWGLLVCHHESPRYV 381
H CH QYM +M S+ASLVM+ QQ K +KLWGL+VCHH SPR+V
Sbjct: 320 HGCHAQYMASMGSVASLVMSVTINEDEDDDGDTGS--DQQPKGRKLWGLMVCHHTSPRFV 377
Query: 382 PFPLRYACEFLAQVFAVHVNKEFELERQVREKSILRMQTMLSDMLLRESSPLSIVSGTPN 441
PFPLRYACEFL QVF + +NKE EL Q +E+ ILR QT+L DMLLR+ +P+ I + +PN
Sbjct: 378 PFPLRYACEFLLQVFGIQINKEVELAAQAKERHILRTQTLLCDMLLRD-APVGIFTQSPN 436
Query: 442 IMDLVKCDGAALLYGGKVWRLQNAPTESQIRDIAFWLSDVHRDSTGLSTDSLHDAGYPGA 501
+MDLVKCDGAAL Y ++W L + P+E++I++I WL + H STGLSTDSL +AGYPGA
Sbjct: 437 VMDLVKCDGAALYYQNQLWVLGSTPSEAEIKNIVAWLQEYHDGSTGLSTDSLVEAGYPGA 496
Query: 502 AALGDMICGMAVAKINSKDILFWFRSHTAAEIRWGGAKHDPSDKDDS-RRMHPRLSFKAF 560
AALGD++CGMA KI+SKD +FWFRSHTA EI+WGGAKH+P D DD+ R+MHPR SFKAF
Sbjct: 497 AALGDVVCGMAAIKISSKDFIFWFRSHTAKEIKWGGAKHEPIDADDNGRKMHPRSSFKAF 556
Query: 561 LEVVKMKSLPWNDYEMDAIHSLQLILRGTLNDD--IKPTRAASLDNQVGD--LKLDGLAE 616
LEVVK +S+PW D EMDAIHSLQLILRG+L D+ K A S+ D K+ GL E
Sbjct: 557 LEVVKWRSVPWEDVEMDAIHSLQLILRGSLQDEDANKNNNAKSIVTAPSDDMKKIQGLLE 616
Query: 617 LQAVTSEMVRLMETATVPILAVDSNGLVNGWNQKVAELTGLRVDEAIGRHILTVVEESSV 676
L+ VT+EMVRL+ETAT PILAVD G +NGWN K AELTGL V EAIG+ ++ +V + SV
Sbjct: 617 LRTVTNEMVRLIETATAPILAVDITGSINGWNNKAAELTGLPVMEAIGKPLVDLVIDDSV 676
Query: 677 PVVQRMLYLALQGXXXXXXXXXXXTHGSKRDDGPVILVVNACASRDLHDHVVGVCFVAQD 736
VV+++L ALQG T + ++GPVIL+VNAC SRDL + VVGVCFVAQD
Sbjct: 677 EVVKQILNSALQGIEEQNLQIKLKTFNHQENNGPVILMVNACCSRDLSEKVVGVCFVAQD 736
Query: 737 MTVHKLVMDKFTRVEGDYKAIIHNPSPLIPPIFGADEFGWCSEWNAAMTKLTGWHRDEVI 796
MT ++MDK+TR++GDY AI+ NPS LIPPIF ++ G C EWN AM K+TG R++ +
Sbjct: 737 MTGQNIIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLEWNEAMQKITGIKREDAV 796
Query: 797 NKMLLGEVFDSTNASCLVKNKDAFVSLCILINSALAGDETEKAPFSFFDRNGKYIECLLS 856
+K+L+GEVF C VK+ L IL+N+ ++G + EK F FF+ +GKYIE L++
Sbjct: 797 DKLLIGEVFTHHEYGCRVKDHGTLTKLSILMNTVISGQDPEKLLFGFFNTDGKYIESLMT 856
Query: 857 VNRKVNADGVITGVFCFIQVPSHELQHALHVQQASQQNALTKLKAYSYMRHAINNPLSGM 916
++ +A+G ITG CF+ V S ELQHAL VQ+ S+Q A+ K +Y+R + NPL+GM
Sbjct: 857 ATKRTDAEGKITGALCFLHVASPELQHALQVQKMSEQAAMNSFKELTYIRQELRNPLNGM 916
Query: 917 LYSRKALKNTGLNEEQMKEVNVADSCHRQLNKILSDLDQDSVMNKSSCLDLEMVEFVLQD 976
++R L+ + L EEQ K + C QL KIL D D +S+ + ++ V+F L++
Sbjct: 917 QFTRNLLEPSDLTEEQRKLLASNVLCQEQLKKILHDTDLESI--EQCYTEMSTVDFNLEE 974
Query: 977 VFVAAVSQVLITCQGKGIRVSCNLPERYMKQTVYGDGVRLQQILSDFLFVSVKFS-PVGG 1035
+ Q + + K I + + P + GD +RLQQ+L+DFL ++F+ P G
Sbjct: 975 ALNTVLMQAMPQSKEKQISIDRDWPAEVSCMHLCGDNLRLQQVLADFLACMLQFTQPAEG 1034
Query: 1036 SVEISCSLTKNSIGENLHLIDLELRIKHQGKGVPADLLSQMYEDDNKEQSDEGMSLAVSR 1095
+ + +IG + + LE R+ H GVP L+ +M+ + S EG+ L +S+
Sbjct: 1035 PIVLQVIPRMENIGSGMQIAHLEFRLVHPAPGVPEALIQEMFR-HSPGASREGLGLYISQ 1093
Query: 1096 NLLRLMNGDVRHMREAGMSTFILSVELASA 1125
L++ M+G V+++RE+ S+FI+ VE A
Sbjct: 1094 KLVKTMSGTVQYLRESESSSFIVLVEFPVA 1123
>Os03g0309200 Similar to Phytochrome B
Length = 1120
Score = 1066 bits (2757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/1122 (48%), Positives = 751/1122 (66%), Gaps = 44/1122 (3%)
Query: 23 RILAQTTLDAELNAEYEEYG---DSFDYSKLVEAQRTTGPEQQARSEKVIAYLHHIQRAK 79
R Q TLDA L+A +E+ G SFDY++ + A T EQQ + AYL IQR
Sbjct: 9 RTHPQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQ-----IAAYLSRIQRGG 63
Query: 80 LIQPFGCLLAL-DEKTFNVIALSENAPEMLT-TVSHAVPSVDD---PPKLRIGTNVWSLF 134
IQPFGC LA+ D+ +F ++A SEN ++L + H+VPS+D PP + +G + LF
Sbjct: 64 HIQPFGCTLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLF 123
Query: 135 TDPGATALQKALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCLVVDFEPVKPTEFPA- 193
A L++A ++SLLNP+ + + S KPFYAI+HR +V+D EP + TE PA
Sbjct: 124 APSSAVLLERAFAAREISLLNPLWIHSRVSSKPFYAILHRIDVGVVIDLEPAR-TEDPAL 182
Query: 194 TAAGALQSYKLAAKAISKIQSLPGGSMEVLCNTVVKELFDLTGYDRVMAYKFHEDDHGEV 253
+ AGA+QS KLA +AIS++Q+LPGG +++LC+TVV+ + +LTGYDRVM Y+FHED+HGEV
Sbjct: 183 SIAGAVQSQKLAVRAISRLQALPGGDVKLLCDTVVEYVRELTGYDRVMVYRFHEDEHGEV 242
Query: 254 FAEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSIKIIEDESLHLDISL 313
AE + LEPY+GLHYPATDIPQA+RFLF +N+VRMI DC A +++I+D +L + L
Sbjct: 243 VAESRRNNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCL 302
Query: 314 CGSTLRAPHSCHLQYMENMNSIASLVMAXXXXXXXXXXXXGADQPAQQQKRK-----KLW 368
GSTLR+PH CH QYM NM SIASLVMA G D + KLW
Sbjct: 303 VGSTLRSPHGCHAQYMANMGSIASLVMA-------VIISSGGDDDHNISRGSIPSAMKLW 355
Query: 369 GLLVCHHESPRYVPFPLRYACEFLAQVFAVHVNKEFELERQVREKSILRMQTMLSDMLLR 428
GL+VCHH SPR +PFPLRYACEFL Q F + +N E +L Q+ EK ILR QT+L DMLLR
Sbjct: 356 GLVVCHHTSPRCIPFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLR 415
Query: 429 ESSPLSIVSGTPNIMDLVKCDGAALLYGGKVWRLQNAPTESQIRDIAFWLSDVHRDSTGL 488
+ SP IV+ +P+IMDLVKCDGAAL Y GK + L PTE QI+DI WL+ H DSTGL
Sbjct: 416 D-SPTGIVTQSPSIMDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGL 474
Query: 489 STDSLHDAGYPGAAALGDMICGMAVAKINSKDILFWFRSHTAAEIRWGGAKHDPSDKDDS 548
STDSL DAGYPGAAALGD + GMAVA I D LFWFRSHTA EI+WGGAKH P DKDD
Sbjct: 475 STDSLADAGYPGAAALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDG 534
Query: 549 RRMHPRLSFKAFLEVVKMKSLPWNDYEMDAIHSLQLILRGTLNDDIKPT-RAASLDN--- 604
+RMHPR SFKAFLEVVK +SLPW + EMDAIHSLQLILR + D + T + ++ N
Sbjct: 535 QRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQV 594
Query: 605 QVGDLKLDGLAELQAVTSEMVRLMETATVPILAVDSNGLVNGWNQKVAELTGLRVDEAIG 664
Q+G+L+L G+ EL +V EMVRL+ETATVPI AVD++G +NGWN KVAELTGL V+EA+G
Sbjct: 595 QLGELELRGIDELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMG 654
Query: 665 RHILT-VVEESSVPVVQRMLYLALQGXXXXXXXXXXXTHGSKRDDGPVILVVNACASRDL 723
+ ++ ++ + S V ++L AL+G T G ++ GP+ ++VNAC+SRD
Sbjct: 655 KSLVNDLIFKESEETVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDY 714
Query: 724 HDHVVGVCFVAQDMTVHKLVMDKFTRVEGDYKAIIHNPSPLIPPIFGADEFGWCSEWNAA 783
++VGVCFV QD+T K+VMDKF ++GDYKAI+HNP+PLIPPIF +DE CSEWN A
Sbjct: 715 TKNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTA 774
Query: 784 MTKLTGWHRDEVINKMLLGEVFDSTNASCLVKNKDAFVSLCILINSALAGDETEKAPFSF 843
M KLTGW R EV+ K+L+GEVF + C +K DA I++++A+ G + EK PFSF
Sbjct: 775 MEKLTGWSRGEVVGKLLVGEVFGNC---CRLKGPDALTKFMIVLHNAIGGQDCEKFPFSF 831
Query: 844 FDRNGKYIECLLSVNRKVNADGVITGVFCFIQVPSHELQHALHVQQASQQNALTKLKAYS 903
FD+NGKY++ LL+ N + DG G FCF+Q+ S ELQ A +Q+ ++ ++K +
Sbjct: 832 FDKNGKYVQALLTANTRSRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELA 891
Query: 904 YMRHAINNPLSGMLYSRKALKNTGLNEEQMKEVNVADSCHRQLNKILSDLDQDSVMNKSS 963
Y+ I NPL+G+ ++ L+ T L ++Q + + + +C +Q++KI+ D S+ + S
Sbjct: 892 YIYQEIKNPLNGIRFTNSLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGS- 950
Query: 964 CLDLEMVEFVLQDVFVAAVSQVLITCQGKGIRVSCNLPERYMKQTVYGDGVRLQQILSDF 1023
L LE EF L V A VSQV+I + + +++ ++P+ + + YGD R+QQ+L DF
Sbjct: 951 -LVLEKGEFSLGSVMNAVVSQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDF 1009
Query: 1024 LFVSVKFSPV-GGSVEISC--SLTKNSIGENLHLIDLELRIKHQGKGVPADLLSQMYEDD 1080
L V+F+P G VEI ++ +NS G + L R G+G+P +++ M+ +
Sbjct: 1010 LLSMVRFAPAENGWVEIQVRPNIKQNSDGTDTML--FLFRFACPGEGLPPEIVQDMF-SN 1066
Query: 1081 NKEQSDEGMSLAVSRNLLRLMNGDVRHMREAGMSTFILSVEL 1122
++ + EG+ L++ R +L+LM G+V+++RE+ S F + +EL
Sbjct: 1067 SRWTTQEGIGLSICRKILKLMGGEVQYIRESERSFFHIVLEL 1108
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 35,899,197
Number of extensions: 1482810
Number of successful extensions: 3170
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 3148
Number of HSP's successfully gapped: 3
Length of query: 1128
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1016
Effective length of database: 11,187,833
Effective search space: 11366838328
Effective search space used: 11366838328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 161 (66.6 bits)