Os03g0719800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phytochrome A.
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Os03g0719800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phytochrome A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.14 | 0.316 | 11.6 | 0.757 | 0.927 | -0.0172 | -0.458 | -1.33 | -0.124 | 21.3 | 20.01 | 15762 | -- | -- |
| 47.48 | 0.321 | 11.6 | 0.982 | 0.912 | -0.19 | -0.51 | -- | -0.0233 | 21.2 | 31.72 | 29318 | -- | -- |
| 45.8 | 0.315 | 11.6 | 0.762 | 0.933 | -0.0195 | -- | -1.33 | -0.124 | 21.3 | 20 | 15582 | -- | -- |
| 48.23 | 0.323 | 11.6 | 1.02 | 0.922 | -0.238 | -- | -- | -0.0134 | 21.2 | 30.39 | 29328 | -- | -- |
| 89.77 | 0.444 | 11.6 | 1.09 | -- | -0.368 | -- | 0.0527 | -0.0608 | -- | 20 | 15582 | -- | -- |
| 48.9 | 0.328 | 11.6 | 1.02 | 0.928 | -- | -0.479 | -- | -0.0615 | 21.2 | -- | -- | -- | -- |
| 49.72 | 0.33 | 11.6 | 1.04 | 0.93 | -- | -- | -- | -0.0608 | 21.2 | -- | -- | -- | -- |
| 89.78 | 0.443 | 11.6 | 1.09 | -- | -0.367 | -- | -- | -0.0611 | -- | 20 | 15582 | -- | -- |
| 59.31 | 0.359 | 11.7 | -- | 0.93 | -0.701 | -- | -- | -0.346 | 21.2 | 59.96 | 47520 | -- | -- |
| 99.93 | 0.467 | 11.6 | 1.05 | -- | -- | -- | -- | -0.0653 | -- | -- | -- | -- | -- |
| 78.31 | 0.414 | 11.6 | -- | 0.93 | -- | -- | -- | -0.177 | 21.3 | -- | -- | -- | -- |
| 108.23 | 0.485 | 11.7 | -- | -- | -0.706 | -- | -- | -0.369 | -- | 59.97 | 46294 | -- | -- |
| 128.74 | 0.53 | 11.6 | -- | -- | -- | -- | -- | -0.181 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.29 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 6 | 43.42 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 24 | 43.86 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 48 | 44.17 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 5 | 18 |
| 63 | 44.29 | temperature | 25.0 | 90 | < th | dose independent | rect. | 9 | 4 |
| 113 | 44.59 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 122 | 44.63 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 125 | 44.65 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 8 | 5 |
| 128 | 44.65 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 134 | 44.67 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 15 | 7 |
| 140 | 44.69 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 17 | 20 |
| 152 | 44.71 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 6 | 8 |
| 159 | 44.73 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 17 | 22 |
| 178 | 44.75 | temperature | 25.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 228 | 44.79 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 24 | 13 |
| 238 | 44.81 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 244 | 44.82 | radiation | 10.0 | 14400 | > th | dose independent | sin | 1 | NA |
| 252 | 44.83 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 270 | 44.83 | temperature | 25.0 | 270 | > th | dose independent | rect. | 24 | 14 |
| 306 | 44.86 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 321 | 44.86 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 355 | 44.88 | temperature | 20.0 | 720 | < th | dose dependent | sin | 7 | NA |
| 361 | 44.89 | radiation | 10.0 | 14400 | > th | dose independent | no | NA | NA |
| 466 | 44.92 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 548 | 44.99 | temperature | 25.0 | 10 | > th | dose independent | rect. | 22 | 1 |
| 554 | 44.99 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 22 | 1 |
| 555 | 44.99 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 556 | 44.99 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 7 |
| 571 | 45.01 | wind | 3.0 | 10 | < th | dose independent | rect. | 22 | 1 |
| 575 | 45.01 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 596 | 45.01 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 9 | 4 |
| 600 | 45.02 | humidity | 80.0 | 10 | > th | dose independent | rect. | 22 | 1 |
| 603 | 45.02 | temperature | 20.0 | 720 | > th | dose independent | rect. | 24 | 11 |
| 611 | 45.03 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 666 | 45.06 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 22 | 1 |
| 701 | 45.06 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 22 | 1 |
| 708 | 45.07 | temperature | 20.0 | 720 | < th | dose independent | rect. | 24 | 13 |
| 713 | 45.07 | wind | 1.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 714 | 45.07 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 22 | 1 |
| 741 | 45.08 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 9 | 2 |
| 742 | 45.08 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 747 | 45.09 | temperature | 10.0 | 10 | > th | dose independent | rect. | 22 | 1 |
| 749 | 45.09 | temperature | 30.0 | 10 | < th | dose independent | rect. | 22 | 1 |
| 750 | 45.09 | humidity | 50.0 | 10 | > th | dose independent | rect. | 22 | 1 |
| 753 | 45.09 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 22 | 1 |
| 754 | 45.09 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 22 | 1 |
| 756 | 45.09 | radiation | 1.0 | 10 | < th | dose independent | rect. | 22 | 1 |
| 765 | 45.09 | temperature | 10.0 | 10 | > th | dose independent | rect. | 23 | 23 |
| 766 | 45.09 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 22 | 1 |
| 781 | 45.10 | wind | 1.0 | 90 | > th | dose independent | rect. | 23 | 7 |
| 811 | 45.11 | temperature | 20.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 814 | 45.11 | wind | 9.0 | 10 | < th | dose dependent | rect. | 22 | 1 |
| 823 | 45.12 | wind | 1.0 | 10 | > th | dose independent | rect. | 22 | 1 |
| 840 | 45.13 | wind | 9.0 | 10 | < th | dose independent | rect. | 23 | 23 |
| 882 | 45.14 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 22 | 1 |
| 892 | 45.15 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 896 | 45.16 | temperature | 25.0 | 270 | > th | dose independent | rect. | 9 | 2 |
| 937 | 45.18 | wind | 7.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 939 | 45.18 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 966 | 45.19 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 15 | 6 |