Os03g0752100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phytochrome C.
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Os03g0752100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phytochrome C.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.98 | 0.348 | 12.7 | 0.548 | 1.54 | 0.474 | 0.851 | 1.44 | 0.0359 | 18.2 | 20.4 | 1281 | -- | -- |
| 58.92 | 0.357 | 12.8 | 0.316 | 1.56 | 0.319 | 0.709 | -- | -0.0461 | 18.1 | 24.5 | 2630 | -- | -- |
| 56.48 | 0.35 | 12.7 | 0.56 | 1.54 | 0.446 | -- | 1.36 | 0.0354 | 18.1 | 20.83 | 1248 | -- | -- |
| 60.46 | 0.362 | 12.8 | 0.32 | 1.56 | 0.289 | -- | -- | -0.0327 | 18 | 24.6 | 2540 | -- | -- |
| 169.87 | 0.607 | 12.7 | 0.458 | -- | 0.642 | -- | 1.3 | -0.0807 | -- | 20.87 | 542 | -- | -- |
| 60.95 | 0.366 | 12.8 | 0.408 | 1.54 | -- | 0.873 | -- | 0.045 | 18.2 | -- | -- | -- | -- |
| 62.76 | 0.371 | 12.8 | 0.399 | 1.54 | -- | -- | -- | 0.0486 | 18.1 | -- | -- | -- | -- |
| 116.65 | 0.503 | 12.8 | 0.219 | -- | 1.25 | -- | -- | -0.151 | -- | 28.2 | 472 | -- | -- |
| 61.5 | 0.365 | 12.8 | -- | 1.55 | 0.338 | -- | -- | -0.11 | 18.1 | 22 | 47520 | -- | -- |
| 186.17 | 0.638 | 12.7 | 0.356 | -- | -- | -- | -- | 0.0143 | -- | -- | -- | -- | -- |
| 66.96 | 0.383 | 12.8 | -- | 1.54 | -- | -- | -- | 0.00408 | 18.2 | -- | -- | -- | -- |
| 116.84 | 0.503 | 12.8 | -- | -- | 1.26 | -- | -- | -0.163 | -- | 28.26 | 462 | -- | -- |
| 189.52 | 0.643 | 12.7 | -- | -- | -- | -- | -- | -0.0252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.85 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 15 |
| 5 | 50.04 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 13 |
| 7 | 50.08 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 9 |
| 11 | 50.40 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 18 |
| 13 | 50.69 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 15 |
| 17 | 50.89 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 13 |
| 19 | 50.93 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 9 |
| 25 | 50.94 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 32 | 51.03 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 7 |
| 37 | 51.24 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 40 | 51.42 | radiation | 1.0 | 30 | < th | dose independent | sin | 10 | NA |
| 41 | 51.42 | humidity | 80.0 | 30 | > th | dose independent | rect. | 23 | 6 |
| 42 | 51.43 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 15 |
| 43 | 51.44 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 7 |
| 47 | 51.50 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 48 | 51.50 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 53 | 51.63 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 19 |
| 54 | 51.65 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 73 | 51.94 | humidity | 70.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 75 | 51.95 | temperature | 30.0 | 30 | < th | dose independent | rect. | 5 | 18 |
| 77 | 51.96 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 79 | 52.00 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 94 | 52.02 | radiation | 10.0 | 270 | < th | dose independent | rect. | 16 | 15 |
| 96 | 52.03 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 14 |
| 101 | 52.06 | radiation | 10.0 | 10 | < th | dose dependent | sin | 10 | NA |
| 103 | 52.07 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 23 | 6 |
| 106 | 52.13 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 118 | 52.19 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 142 | 52.42 | temperature | 10.0 | 30 | > th | dose independent | rect. | 23 | 6 |
| 143 | 52.42 | temperature | 30.0 | 30 | < th | dose independent | rect. | 23 | 6 |
| 144 | 52.42 | humidity | 50.0 | 30 | > th | dose independent | rect. | 23 | 6 |
| 147 | 52.42 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 23 | 6 |
| 154 | 52.42 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 18 |
| 156 | 52.42 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 5 | 18 |
| 161 | 52.43 | wind | 9.0 | 30 | < th | dose independent | rect. | 23 | 6 |
| 164 | 52.43 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 16 | 15 |
| 167 | 52.45 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 18 |
| 168 | 52.45 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 200 | 52.52 | temperature | 25.0 | 270 | < th | dose independent | sin | 5 | NA |
| 216 | 52.59 | radiation | 1.0 | 90 | > th | dose independent | rect. | 5 | 1 |
| 218 | 52.60 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 16 |
| 232 | 52.62 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 234 | 52.65 | radiation | 1.0 | 30 | > th | dose independent | sin | 8 | NA |
| 253 | 52.69 | wind | 9.0 | 30 | < th | dose independent | rect. | 5 | 18 |
| 260 | 52.73 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 5 |
| 267 | 52.75 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 276 | 52.78 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 5 | 18 |
| 310 | 52.89 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 14 |
| 319 | 52.91 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 334 | 52.99 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 23 | 6 |
| 336 | 52.99 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 23 | 6 |
| 337 | 53.00 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 5 |
| 344 | 53.03 | wind | 5.0 | 720 | < th | dose independent | rect. | 7 | 2 |
| 370 | 53.06 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 22 | 3 |
| 382 | 53.08 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 397 | 53.11 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 411 | 53.14 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 414 | 53.15 | wind | 1.0 | 30 | > th | dose independent | rect. | 23 | 6 |
| 425 | 53.18 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 444 | 53.20 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 14 |
| 449 | 53.20 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 462 | 53.23 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 21 |
| 470 | 53.26 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 23 | 6 |
| 484 | 53.29 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 486 | 53.29 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 492 | 53.31 | humidity | 50.0 | 10 | > th | dose independent | rect. | 8 | 9 |
| 496 | 53.31 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 528 | 53.39 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 529 | 53.39 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 532 | 53.39 | radiation | 40.0 | 270 | < th | dose independent | rect. | 17 | 14 |
| 577 | 53.48 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 581 | 53.50 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 14 |
| 603 | 53.54 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 10 |
| 605 | 53.54 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 620 | 53.57 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 639 | 53.61 | humidity | 80.0 | 270 | > th | dose independent | rect. | 23 | 2 |
| 659 | 53.63 | temperature | 30.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 661 | 53.63 | wind | 9.0 | 30 | < th | dose dependent | rect. | 23 | 6 |
| 671 | 53.64 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 21 |
| 691 | 53.68 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 11 |
| 747 | 53.78 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 8 | 9 |
| 763 | 53.81 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 14 |
| 768 | 53.81 | wind | 9.0 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 810 | 53.88 | temperature | 20.0 | 720 | > th | dose independent | rect. | 6 | 13 |
| 824 | 53.91 | wind | 3.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 835 | 53.94 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 19 |
| 838 | 53.94 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 19 |
| 848 | 53.95 | humidity | 50.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 862 | 53.97 | temperature | 15.0 | 30 | > th | dose independent | rect. | 17 | 15 |
| 865 | 53.97 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 19 |
| 881 | 53.99 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 5 | 2 |
| 893 | 54.00 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 23 | 2 |
| 894 | 54.00 | wind | 7.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 902 | 54.01 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 912 | 54.03 | wind | 3.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 920 | 54.03 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 939 | 54.05 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 945 | 54.06 | wind | 9.0 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 951 | 54.07 | temperature | 20.0 | 720 | > th | dose independent | rect. | 6 | 19 |
| 959 | 54.08 | wind | 5.0 | 270 | < th | dose independent | rect. | 21 | 5 |
| 982 | 54.10 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 17 |
| 988 | 54.11 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 5 | 3 |