BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0718000 Os03g0718000|AK105178
(273 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0718000 Similar to Anthranilate synthase beta chain 565 e-161
Os04g0463500 Similar to Anthranilate synthase beta chain 333 7e-92
>Os03g0718000 Similar to Anthranilate synthase beta chain
Length = 273
Score = 565 bits (1455), Expect = e-161, Method: Compositional matrix adjust.
Identities = 273/273 (100%), Positives = 273/273 (100%)
Query: 1 MATAARLLPKIQSPASPAVAEARRRRPSSLRLGVTSGPARTLKQKLVAKSAVSVVEGENA 60
MATAARLLPKIQSPASPAVAEARRRRPSSLRLGVTSGPARTLKQKLVAKSAVSVVEGENA
Sbjct: 1 MATAARLLPKIQSPASPAVAEARRRRPSSLRLGVTSGPARTLKQKLVAKSAVSVVEGENA 60
Query: 61 FDGVKQDTRPIIVIDNYDSFTYNLCQYMGEVGANFEVYRNDDITVEEIKKISPRGILISP 120
FDGVKQDTRPIIVIDNYDSFTYNLCQYMGEVGANFEVYRNDDITVEEIKKISPRGILISP
Sbjct: 61 FDGVKQDTRPIIVIDNYDSFTYNLCQYMGEVGANFEVYRNDDITVEEIKKISPRGILISP 120
Query: 121 GPGTPQDSGISLQTVQDLGPSTPLFGVCMGLQCIGEAFGGKVVRSPYGVVHGKGSLVHYE 180
GPGTPQDSGISLQTVQDLGPSTPLFGVCMGLQCIGEAFGGKVVRSPYGVVHGKGSLVHYE
Sbjct: 121 GPGTPQDSGISLQTVQDLGPSTPLFGVCMGLQCIGEAFGGKVVRSPYGVVHGKGSLVHYE 180
Query: 181 EKLDGTLFSGLPNPFQAGRYHSLVIEKDSFPHDALEITAWTDDGLIMAARHRKYKHIQGV 240
EKLDGTLFSGLPNPFQAGRYHSLVIEKDSFPHDALEITAWTDDGLIMAARHRKYKHIQGV
Sbjct: 181 EKLDGTLFSGLPNPFQAGRYHSLVIEKDSFPHDALEITAWTDDGLIMAARHRKYKHIQGV 240
Query: 241 QFHPESIITTEGRLMVKNFIKIIEGYEALNCLP 273
QFHPESIITTEGRLMVKNFIKIIEGYEALNCLP
Sbjct: 241 QFHPESIITTEGRLMVKNFIKIIEGYEALNCLP 273
>Os04g0463500 Similar to Anthranilate synthase beta chain
Length = 288
Score = 333 bits (855), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 148/201 (73%), Positives = 179/201 (89%)
Query: 67 DTRPIIVIDNYDSFTYNLCQYMGEVGANFEVYRNDDITVEEIKKISPRGILISPGPGTPQ 126
+ +PIIVIDNYDSFTYNLCQYMGE+G NFEVYRND++T+E++K+ +PRGILISPGPG PQ
Sbjct: 80 EKQPIIVIDNYDSFTYNLCQYMGELGLNFEVYRNDELTIEDVKRKNPRGILISPGPGEPQ 139
Query: 127 DSGISLQTVQDLGPSTPLFGVCMGLQCIGEAFGGKVVRSPYGVVHGKGSLVHYEEKLDGT 186
DSGISLQTV +LGP+ P+FGVCMGLQCIGEAFGGK++R+P GV+HGK S V Y+E+L
Sbjct: 140 DSGISLQTVLELGPTIPIFGVCMGLQCIGEAFGGKIIRAPSGVMHGKSSPVRYDEELGKA 199
Query: 187 LFSGLPNPFQAGRYHSLVIEKDSFPHDALEITAWTDDGLIMAARHRKYKHIQGVQFHPES 246
LF+GLPNPF A RYHSLVIE+++FPHDALE TAWT+DGLIMAARH+KY+HIQGVQFHPES
Sbjct: 200 LFNGLPNPFTAARYHSLVIEQETFPHDALEATAWTEDGLIMAARHKKYRHIQGVQFHPES 259
Query: 247 IITTEGRLMVKNFIKIIEGYE 267
IIT EG+ ++ NF++ IE E
Sbjct: 260 IITPEGKRIILNFVRFIEELE 280
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.137 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,054,466
Number of extensions: 462250
Number of successful extensions: 1208
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1208
Number of HSP's successfully gapped: 2
Length of query: 273
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 174
Effective length of database: 11,866,615
Effective search space: 2064791010
Effective search space used: 2064791010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)