Os03g0718000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Anthranilate synthase beta chain.
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Os03g0718000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Anthranilate synthase beta chain.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.16 | 0.451 | 9.51 | -0.189 | 1.08 | 0.474 | 0.419 | 3.81 | 0.41 | 8.92 | 25.2 | 4316 | -- | -- |
| 100.38 | 0.467 | 9.4 | 0.715 | 1.06 | 0.587 | 0.406 | -- | 0.598 | 9.01 | 28.9 | 4699 | -- | -- |
| 92.36 | 0.448 | 9.51 | -0.204 | 1.08 | 0.442 | -- | 3.93 | 0.402 | 8.96 | 25.6 | 4310 | -- | -- |
| 100.77 | 0.468 | 9.4 | 0.742 | 1.06 | 0.6 | -- | -- | 0.591 | 9.09 | 28.9 | 4814 | -- | -- |
| 155.45 | 0.581 | 9.54 | -0.169 | -- | 0.547 | -- | 3.74 | 0.43 | -- | 26.3 | 5058 | -- | -- |
| 113.43 | 0.499 | 9.4 | 0.56 | 1.09 | -- | 0.452 | -- | 0.568 | 9.06 | -- | -- | -- | -- |
| 114.14 | 0.5 | 9.4 | 0.576 | 1.09 | -- | -- | -- | 0.568 | 9.06 | -- | -- | -- | -- |
| 140.86 | 0.553 | 9.4 | 0.784 | -- | 1 | -- | -- | 0.723 | -- | 27.6 | 725 | -- | -- |
| 115.07 | 0.5 | 9.42 | -- | 1.06 | 0.439 | -- | -- | 0.511 | 9 | 29 | 4612 | -- | -- |
| 182.25 | 0.631 | 9.43 | 0.574 | -- | -- | -- | -- | 0.574 | -- | -- | -- | -- | -- |
| 122.9 | 0.519 | 9.42 | -- | 1.09 | -- | -- | -- | 0.504 | 9.02 | -- | -- | -- | -- |
| 155.75 | 0.581 | 9.43 | -- | -- | 0.999 | -- | -- | 0.575 | -- | 28.68 | 601 | -- | -- |
| 190.95 | 0.645 | 9.44 | -- | -- | -- | -- | -- | 0.511 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.34 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 2 | 89.74 | radiation | 40 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 3 | 89.85 | temperature | 25 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 5 | 90.15 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 10 |
| 6 | 90.24 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 3 |
| 7 | 90.29 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 13 |
| 13 | 90.38 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 13 |
| 14 | 90.42 | temperature | 25 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 15 | 90.44 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 11 |
| 22 | 90.57 | temperature | 25 | 4320 | < th | dose independent | sin | 7 | NA |
| 29 | 90.73 | temperature | 25 | 4320 | > th | dose independent | sin | 8 | NA |
| 37 | 90.80 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 3 |
| 39 | 90.83 | temperature | 25 | 720 | > th | dose dependent | sin | 6 | NA |
| 47 | 90.86 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 64 | 90.96 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 73 | 91.02 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 78 | 91.04 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 87 | 91.07 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 3 |
| 106 | 91.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 5 |
| 112 | 91.15 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 15 |
| 121 | 91.21 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 14 |
| 133 | 91.27 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 251 | 91.65 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 21 |
| 258 | 91.67 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 342 | 91.83 | temperature | 30 | 720 | > th | dose independent | sin | 8 | NA |
| 379 | 91.92 | temperature | 30 | 720 | < th | dose independent | sin | 8 | NA |
| 389 | 91.93 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 13 |
| 424 | 92.00 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 469 | 92.04 | radiation | 40 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 471 | 92.04 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 22 |
| 524 | 92.15 | radiation | 10 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 535 | 92.17 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 22 |
| 574 | 92.23 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 615 | 92.27 | radiation | 10 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 638 | 92.30 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 657 | 92.34 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 667 | 92.37 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 23 |
| 694 | 92.39 | temperature | 25 | 4320 | > th | dose dependent | sin | 7 | NA |
| 714 | 92.41 | radiation | 40 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 918 | 92.71 | temperature | 25 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 925 | 92.72 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 965 | 92.81 | radiation | 40 | 14400 | > th | dose dependent | sin | 18 | NA |