Os04g0463500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Anthranilate synthase beta chain.
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Os04g0463500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Anthranilate synthase beta chain.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.05 | 0.282 | 12.6 | -0.134 | 0.876 | 0.344 | 0.00234 | 1.42 | -0.298 | 19.8 | 26 | 29 | -- | -- |
| 39.55 | 0.295 | 12.6 | 0.0835 | 0.868 | 0.227 | 0.176 | -- | -0.257 | 19.9 | 26 | 29 | -- | -- |
| 36.04 | 0.28 | 12.6 | -0.132 | 0.875 | 0.346 | -- | 1.43 | -0.296 | 19.8 | 26 | 27 | -- | -- |
| 39.55 | 0.293 | 12.6 | 0.093 | 0.873 | 0.237 | -- | -- | -0.255 | 19.9 | 26.3 | 33 | -- | -- |
| 76.14 | 0.409 | 12.6 | -0.0946 | -- | 0.553 | -- | 1.65 | -0.301 | -- | 23.37 | 15 | -- | -- |
| 40.33 | 0.298 | 12.6 | 0.032 | 0.873 | -- | 0.213 | -- | -0.306 | 20.2 | -- | -- | -- | -- |
| 40.46 | 0.298 | 12.6 | 0.0262 | 0.874 | -- | -- | -- | -0.306 | 20.1 | -- | -- | -- | -- |
| 80.27 | 0.419 | 12.5 | 0.0992 | -- | 0.355 | -- | -- | -0.251 | -- | 24.8 | 8 | -- | -- |
| 39.72 | 0.294 | 12.6 | -- | 0.875 | 0.216 | -- | -- | -0.267 | 19.9 | 26.3 | 42 | -- | -- |
| 82.43 | 0.424 | 12.5 | 0.019 | -- | -- | -- | -- | -0.316 | -- | -- | -- | -- | -- |
| 40.48 | 0.298 | 12.6 | -- | 0.873 | -- | -- | -- | -0.309 | 20.1 | -- | -- | -- | -- |
| 80.51 | 0.419 | 12.5 | -- | -- | 0.323 | -- | -- | -0.267 | -- | 24.8 | 8 | -- | -- |
| 82.44 | 0.424 | 12.5 | -- | -- | -- | -- | -- | -0.318 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.84 | radiation | 40.0 | 270 | < th | dose independent | rect. | 18 | 20 |
| 2 | 35.03 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 3 | 35.06 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 4 | 35.07 | wind | 5.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 6 | 35.16 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 18 | 35.46 | radiation | 40.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 21 | 35.49 | temperature | 25.0 | 90 | < th | dose independent | rect. | 16 | 17 |
| 22 | 35.49 | humidity | 70.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 25 | 35.53 | humidity | 70.0 | 270 | > th | dose independent | rect. | 20 | 16 |
| 27 | 35.53 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 19 | 21 |
| 40 | 35.64 | wind | 5.0 | 90 | < th | dose independent | rect. | 9 | 16 |
| 44 | 35.65 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 48 | 35.68 | temperature | 15.0 | 270 | > th | dose independent | rect. | 2 | 15 |
| 54 | 35.70 | wind | 9.0 | 270 | < th | dose dependent | rect. | 17 | 8 |
| 55 | 35.71 | temperature | 20.0 | 270 | > th | dose independent | rect. | 7 | 16 |
| 60 | 35.74 | temperature | 20.0 | 10 | > th | dose independent | rect. | 19 | 21 |
| 69 | 35.78 | wind | 5.0 | 90 | < th | dose independent | sin | 19 | NA |
| 79 | 35.80 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 16 | 16 |
| 80 | 35.80 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 18 | 20 |
| 85 | 35.83 | wind | 5.0 | 90 | > th | dose independent | rect. | 16 | 16 |
| 86 | 35.83 | wind | 5.0 | 90 | < th | dose independent | rect. | 7 | 20 |
| 113 | 35.91 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 18 |
| 126 | 35.94 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 131 | 35.95 | wind | 3.0 | 90 | > th | dose dependent | rect. | 12 | 21 |
| 132 | 35.96 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 8 | 8 |
| 133 | 35.96 | wind | 5.0 | 90 | < th | dose independent | rect. | 7 | 9 |
| 139 | 35.96 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 8 | 5 |
| 140 | 35.96 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 159 | 36.00 | wind | 5.0 | 90 | < th | dose independent | rect. | 11 | 14 |
| 164 | 36.01 | wind | 5.0 | 90 | > th | dose independent | rect. | 12 | 21 |
| 167 | 36.02 | humidity | 80.0 | 720 | < th | dose independent | rect. | 3 | 10 |
| 185 | 36.04 | humidity | 70.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 200 | 36.06 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 208 | 36.07 | wind | 5.0 | 90 | < th | dose independent | sin | 14 | NA |
| 210 | 36.07 | wind | 5.0 | 90 | > th | dose independent | rect. | 16 | 11 |
| 229 | 36.09 | humidity | 80.0 | 720 | < th | dose independent | rect. | 22 | 15 |
| 234 | 36.09 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 8 | 18 |
| 236 | 36.10 | humidity | 80.0 | 720 | < th | dose independent | rect. | 7 | 6 |
| 238 | 36.10 | wind | 5.0 | 90 | > th | dose independent | rect. | 16 | 9 |
| 239 | 36.10 | humidity | 80.0 | 720 | < th | dose independent | rect. | 24 | 13 |
| 258 | 36.12 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 269 | 36.12 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 10 | 20 |
| 270 | 36.12 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 271 | 36.13 | wind | 5.0 | 90 | > th | dose independent | sin | 15 | NA |
| 272 | 36.13 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 7 |
| 314 | 36.15 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 315 | 36.15 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 341 | 36.18 | wind | 3.0 | 90 | > th | dose dependent | rect. | 12 | 15 |
| 342 | 36.18 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 347 | 36.19 | temperature | 25.0 | 270 | < th | dose independent | rect. | 22 | 8 |
| 373 | 36.21 | radiation | 30.0 | 10 | < th | dose independent | rect. | 16 | 16 |
| 405 | 36.24 | wind | 5.0 | 90 | > th | dose independent | rect. | 12 | 15 |
| 423 | 36.26 | radiation | 40.0 | 270 | < th | dose independent | rect. | 8 | 17 |
| 449 | 36.28 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 450 | 36.28 | temperature | 10.0 | 10 | > th | dose independent | rect. | 8 | 8 |
| 453 | 36.28 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 454 | 36.28 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 8 | 8 |
| 455 | 36.28 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 8 | 8 |
| 456 | 36.28 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 457 | 36.28 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 16 |
| 461 | 36.28 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 8 | 8 |
| 498 | 36.30 | temperature | 25.0 | 30 | < th | dose dependent | no | NA | NA |
| 499 | 36.30 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 11 | 1 |
| 507 | 36.30 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 522 | 36.31 | wind | 9.0 | 90 | < th | dose dependent | rect. | 7 | 9 |
| 527 | 36.31 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 528 | 36.31 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 531 | 36.31 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 532 | 36.31 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 534 | 36.32 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 539 | 36.32 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 1 | 16 |
| 541 | 36.32 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 16 |
| 556 | 36.33 | wind | 3.0 | 90 | > th | dose dependent | rect. | 12 | 11 |
| 557 | 36.33 | wind | 3.0 | 90 | > th | dose dependent | rect. | 16 | 16 |
| 566 | 36.33 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 568 | 36.33 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 571 | 36.34 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 8 |
| 574 | 36.34 | radiation | 1.0 | 10 | > th | dose independent | rect. | 8 | 8 |
| 575 | 36.34 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 8 |
| 579 | 36.34 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 583 | 36.34 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 612 | 36.37 | wind | 5.0 | 90 | < th | dose independent | rect. | 13 | 14 |
| 623 | 36.37 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 638 | 36.38 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 17 | 16 |
| 648 | 36.38 | wind | 3.0 | 90 | > th | dose dependent | sin | 16 | NA |
| 664 | 36.39 | wind | 9.0 | 90 | < th | dose dependent | sin | 19 | NA |
| 692 | 36.41 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 9 |
| 697 | 36.41 | wind | 3.0 | 90 | > th | dose dependent | rect. | 12 | 9 |
| 699 | 36.41 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 714 | 36.42 | wind | 9.0 | 10 | < th | dose independent | rect. | 16 | 16 |
| 715 | 36.42 | humidity | 70.0 | 270 | > th | dose independent | rect. | 10 | 16 |
| 717 | 36.42 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 726 | 36.43 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 729 | 36.43 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 760 | 36.44 | temperature | 25.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 765 | 36.45 | temperature | 25.0 | 270 | < th | dose independent | sin | 10 | NA |
| 797 | 36.46 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 804 | 36.47 | temperature | 10.0 | 30 | > th | dose independent | rect. | 6 | 10 |
| 806 | 36.47 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 6 | 10 |
| 807 | 36.47 | temperature | 10.0 | 30 | > th | dose independent | rect. | 16 | 14 |
| 809 | 36.47 | radiation | 30.0 | 30 | < th | dose independent | rect. | 16 | 14 |
| 815 | 36.47 | wind | 9.0 | 720 | < th | dose independent | rect. | 13 | 16 |
| 831 | 36.47 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 8 | 17 |
| 857 | 36.48 | radiation | 10.0 | 10 | > th | dose independent | rect. | 13 | 23 |
| 869 | 36.49 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 6 | 10 |
| 879 | 36.49 | wind | 5.0 | 90 | < th | dose independent | rect. | 18 | 22 |
| 884 | 36.49 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 895 | 36.50 | wind | 5.0 | 90 | > th | dose independent | rect. | 16 | 3 |
| 908 | 36.50 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 21 |
| 922 | 36.51 | wind | 9.0 | 30 | < th | dose independent | rect. | 6 | 10 |
| 949 | 36.52 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 956 | 36.52 | wind | 3.0 | 90 | > th | dose dependent | rect. | 16 | 3 |
| 959 | 36.52 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 14 |
| 991 | 36.54 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 997 | 36.54 | radiation | 10.0 | 270 | < th | dose independent | rect. | 17 | 9 |