BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0717900 Os03g0717900|AK099485
(455 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0717900 Similar to ABRH7 (Fragment) 746 0.0
Os04g0595100 Protein of unknown function DUF760 family protein 250 2e-66
Os11g0456100 Protein of unknown function DUF760 family protein 140 2e-33
>Os03g0717900 Similar to ABRH7 (Fragment)
Length = 455
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/436 (85%), Positives = 374/436 (85%)
Query: 20 KDPQFPRKTLEFDPASRRVGCSPMEXXXXXXXXXXXXXXXXXXXXXXGTPGATSLPFARR 79
KDPQFPRKTLEFDPASRRVGCSPME GTPGATSLPFARR
Sbjct: 20 KDPQFPRKTLEFDPASRRVGCSPMEAAAAAAAALLSPPAAAAPSRRPGTPGATSLPFARR 79
Query: 80 RGVAAVKGLGRQQLTCRRRGVVVRAAXXXXXXXXXXXXXXXXXXXXLQMESPVGQFLSQI 139
RGVAAVKGLGRQQLTCRRRGVVVRAA LQMESPVGQFLSQI
Sbjct: 80 RGVAAVKGLGRQQLTCRRRGVVVRAASWSPSGPESLPPPPSSSIAPLQMESPVGQFLSQI 139
Query: 140 XXXXXXXXXXXXXXXXXXXXTDRDAAKDNGGDKPAPSDGDIVLYRRIAEVKEKERKRALE 199
TDRDAAKDNGGDKPAPSDGDIVLYRRIAEVKEKERKRALE
Sbjct: 140 LATHPHLLPAAAEQQLEQLQTDRDAAKDNGGDKPAPSDGDIVLYRRIAEVKEKERKRALE 199
Query: 200 EILYALVVQKFVEAGVSLVPALSHSISSSGRVDQWAESVEGKLEKMHSQEAYEMIENHLA 259
EILYALVVQKFVEAGVSLVPALSHSISSSGRVDQWAESVEGKLEKMHSQEAYEMIENHLA
Sbjct: 200 EILYALVVQKFVEAGVSLVPALSHSISSSGRVDQWAESVEGKLEKMHSQEAYEMIENHLA 259
Query: 260 LILGQRQADATVAAISKLRVGQVYAASVMYGYFLKRVDQRFQLEKSMKTLPWGSEEEDKL 319
LILGQRQADATVAAISKLRVGQVYAASVMYGYFLKRVDQRFQLEKSMKTLPWGSEEEDKL
Sbjct: 260 LILGQRQADATVAAISKLRVGQVYAASVMYGYFLKRVDQRFQLEKSMKTLPWGSEEEDKL 319
Query: 320 NQVMTTDSRPSPQTSTSHPEMASWTSPNFSAGGPSQSVKPCRLRSYVMSFDSETLQSYAT 379
NQVMTTDSRPSPQTSTSHPEMASWTSPNFSAGGPSQSVKPCRLRSYVMSFDSETLQSYAT
Sbjct: 320 NQVMTTDSRPSPQTSTSHPEMASWTSPNFSAGGPSQSVKPCRLRSYVMSFDSETLQSYAT 379
Query: 380 IRSKEAFGIIEKHTEALFGKPEIVITPEGTVDSSKDEHVRISFAGLRRLILEAVTFGSFL 439
IRSKEAFGIIEKHTEALFGKPEIVITPEGTVDSSKDEHVRISFAGLRRLILEAVTFGSFL
Sbjct: 380 IRSKEAFGIIEKHTEALFGKPEIVITPEGTVDSSKDEHVRISFAGLRRLILEAVTFGSFL 439
Query: 440 WDVESFVDTRYHFVAN 455
WDVESFVDTRYHFVAN
Sbjct: 440 WDVESFVDTRYHFVAN 455
>Os04g0595100 Protein of unknown function DUF760 family protein
Length = 405
Score = 250 bits (638), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 138/330 (41%), Positives = 198/330 (60%), Gaps = 15/330 (4%)
Query: 126 LQMESPVGQFLSQIXXXXXXXXXXXXXXXXXXXXTDRDAAKDNGGDKPAPSDGDIVLYRR 185
L E+P GQ L QI +++DA + P D +LY+R
Sbjct: 87 LMFETPSGQLLVQILQSHPHLLPATVDQQLENLQSEKDAQEKEASK--VPQD---LLYKR 141
Query: 186 IAEVKEKERKRALEEILYALVVQKFVEAGVSLVPALSHSISSSGRVDQWAESVEGKLEKM 245
IAEVKEKER+ LEEI+Y ++ KF+E +S+ PAL+ + R + E +L+ +
Sbjct: 142 IAEVKEKERQNTLEEIIYCWIIYKFMENDISMTPALA-PLGGPVRDISSLPNQEDRLQSI 200
Query: 246 HSQEAYEMIENHLALILGQRQADA--TVAAISKLRVGQVYAASVMYGYFLKRVDQRFQLE 303
HS +A EMI+NHL LI+G++ A TV IS L +G++YAAS+MYGYFLKRVD+RFQLE
Sbjct: 201 HSPDALEMIQNHLNLIMGEKVAAPLDTVVEISNLNLGKLYAASIMYGYFLKRVDERFQLE 260
Query: 304 KSMKTLPWGSEEEDKLNQVMTTDSRPSPQTSTSHPEMASWTSPNFSAGGPSQSVKPCRLR 363
K+MKTLP ++ Q++ + +P+P + T + P +LR
Sbjct: 261 KNMKTLPPNPKQ-----QIVLENLKPNPFWDME--SLVQITPDGEEIDLDDEESNPNKLR 313
Query: 364 SYVMSFDSETLQSYATIRSKEAFGIIEKHTEALFGKPEIVITPEGTVDSSKDEHVRISFA 423
SYV D++TLQ YATIRSKEA +IEK T+ALFG+P+I + +G+V++ + + I+F
Sbjct: 314 SYVSRLDADTLQRYATIRSKEAVSLIEKQTQALFGRPDIKVLDDGSVNAKDGQMITITFI 373
Query: 424 GLRRLILEAVTFGSFLWDVESFVDTRYHFV 453
L L+LEA FGSFLW+ ES V+++YHFV
Sbjct: 374 ELTHLVLEAAAFGSFLWEAESHVESKYHFV 403
>Os11g0456100 Protein of unknown function DUF760 family protein
Length = 351
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 154/283 (54%), Gaps = 25/283 (8%)
Query: 174 APSDGDIVLYRRIAEVKEKERKRALEEILYALVVQKFVEAGVSLVPALSHSISSSGRVDQ 233
+P D L+RRIAE+KE E + A+E+I+Y L+V KF + V LVP LS IS+ R+
Sbjct: 83 SPED---CLHRRIAEMKEHECQTAIEDIMYTLIVYKFFKIEVPLVPNLSKLISNK-RLQI 138
Query: 234 WAESVEGKLEKMHSQEAYEMIENHLALIL-----GQRQADATVAAISKLRVGQVYAASVM 288
W E +LE +H E +I HL I+ + + + I +++ ++Y+AS+M
Sbjct: 139 WPPR-EAELESIHGPEVLGLIREHLTSIIRWVHRNGPKINRSTLRIKRMQFSRIYSASIM 197
Query: 289 YGYFLKRVDQRFQLEKSMKTLPWGSEEEDKLNQVMTTDSRPSPQTSTSHPEMASWTSPNF 348
YGYFLK V R +LE + ++ ++ + +++ + E ++
Sbjct: 198 YGYFLKSVTTRHRLELIL------AQSQEFCPPIQFLNAQFNSTQKQEQEESIGGSAEIS 251
Query: 349 SAGGPSQSVKPCRLRSYVMSFDSETLQSYATIRSKEAFGIIEKHTEALFGKPEIVITPEG 408
S+ PS V L+SY+M FD +TL+ A +RS EA +IEKH+ ALF E
Sbjct: 252 SSSKPSSVVDLHDLKSYMMGFDPKTLELCARLRSCEASNLIEKHSWALFR--------ES 303
Query: 409 TVDSSK-DEHVRISFAGLRRLILEAVTFGSFLWDVESFVDTRY 450
D + DE V + + L+RL+LEA+ FGSFLWDVE +VD Y
Sbjct: 304 MKDFLEPDEAVILDPSSLKRLLLEAIAFGSFLWDVEDYVDEIY 346
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,613,772
Number of extensions: 466602
Number of successful extensions: 1412
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1403
Number of HSP's successfully gapped: 3
Length of query: 455
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 351
Effective length of database: 11,605,545
Effective search space: 4073546295
Effective search space used: 4073546295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)