Os03g0717900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ABRH7 (Fragment).
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Os03g0717900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ABRH7 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.86 | 0.486 | 14 | 1.02 | 2.11 | -1.61 | -1.11 | -0.53 | 0.0872 | 10.8 | 11.35 | 77 | -- | -- |
| 107.18 | 0.482 | 14 | 1.01 | 2.11 | -1.61 | -0.553 | -- | 0.0839 | 10.8 | 11.34 | 74 | -- | -- |
| 107.85 | 0.484 | 14 | 0.986 | 2.12 | -1.59 | -- | 0.314 | 0.0845 | 10.9 | 11.37 | 72 | -- | -- |
| 108.44 | 0.485 | 14 | 0.986 | 2.11 | -1.6 | -- | -- | 0.0814 | 10.9 | 11.11 | 72 | -- | -- |
| 178.08 | 0.622 | 14.1 | 1.51 | -- | -3.05 | -- | 0.651 | 0.0734 | -- | 9.983 | 36 | -- | -- |
| 147.75 | 0.57 | 13.9 | 1 | 3.8 | -- | -0.407 | -- | 0.188 | 11.6 | -- | -- | -- | -- |
| 148.46 | 0.571 | 13.9 | 0.983 | 3.8 | -- | -- | -- | 0.186 | 11.6 | -- | -- | -- | -- |
| 171.96 | 0.611 | 14.1 | 1.05 | -- | -3.03 | -- | -- | -0.0527 | -- | 10.16 | 39 | -- | -- |
| 133.47 | 0.538 | 14 | -- | 2.08 | -1.67 | -- | -- | -0.00408 | 10.8 | 12.77 | 78 | -- | -- |
| 1058.14 | 1.52 | 14 | 0.878 | -- | -- | -- | -- | 0.143 | -- | -- | -- | -- | -- |
| 173.94 | 0.617 | 14 | -- | 3.79 | -- | -- | -- | 0.0768 | 11.6 | -- | -- | -- | -- |
| 196.07 | 0.652 | 14.1 | -- | -- | -3.04 | -- | -- | -0.119 | -- | 11.08 | 20 | -- | -- |
| 1078.46 | 1.53 | 14 | -- | -- | -- | -- | -- | 0.0455 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 107.68 | radiation | 10 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 2 | 108.02 | radiation | 10 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 4 | 108.33 | radiation | 10 | 90 | < th | dose dependent | no | NA | NA |
| 10 | 108.83 | radiation | 10 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 13 | 109.61 | radiation | 10 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 26 | 110.85 | radiation | 10 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 28 | 111.22 | radiation | 10 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 30 | 111.71 | radiation | 10 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 39 | 112.36 | radiation | 1 | 30 | > th | dose independent | sin | 23 | NA |
| 45 | 112.50 | radiation | 10 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 46 | 112.58 | radiation | 10 | 90 | < th | dose dependent | sin | 23 | NA |
| 59 | 113.42 | radiation | 10 | 90 | < th | dose dependent | rect. | 2 | 18 |
| 75 | 114.32 | radiation | 1 | 30 | < th | dose independent | sin | 23 | NA |
| 99 | 115.13 | radiation | 10 | 90 | < th | dose dependent | rect. | 7 | 13 |
| 106 | 115.31 | humidity | 50 | 30 | > th | dose dependent | rect. | 2 | 18 |
| 111 | 115.44 | radiation | 1 | 90 | < th | dose independent | rect. | 7 | 12 |
| 233 | 117.89 | radiation | 1 | 90 | < th | dose independent | rect. | 2 | 18 |
| 280 | 118.50 | radiation | 1 | 90 | < th | dose independent | rect. | 15 | 4 |
| 287 | 118.55 | radiation | 1 | 90 | < th | dose dependent | rect. | 15 | 4 |
| 348 | 119.35 | radiation | 1 | 90 | < th | dose dependent | rect. | 17 | 2 |
| 354 | 119.42 | humidity | 70 | 30 | > th | dose independent | rect. | 2 | 18 |
| 364 | 119.59 | radiation | 10 | 90 | > th | dose independent | no | NA | NA |
| 365 | 119.59 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 12 |
| 446 | 119.65 | humidity | 50 | 10 | > th | dose dependent | rect. | 11 | 9 |
| 461 | 119.80 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 23 |
| 463 | 119.87 | radiation | 1 | 90 | < th | dose independent | rect. | 17 | 2 |
| 581 | 120.77 | radiation | 10 | 90 | < th | dose independent | rect. | 7 | 23 |
| 675 | 121.39 | radiation | 10 | 90 | < th | dose independent | rect. | 13 | 22 |
| 712 | 121.68 | radiation | 10 | 90 | < th | dose independent | rect. | 23 | 23 |
| 721 | 121.73 | radiation | 10 | 90 | < th | dose independent | rect. | 1 | 23 |
| 731 | 121.83 | radiation | 10 | 90 | < th | dose independent | rect. | 15 | 23 |
| 740 | 121.94 | radiation | 10 | 90 | < th | dose independent | rect. | 17 | 22 |
| 802 | 122.30 | radiation | 10 | 90 | < th | dose independent | rect. | 15 | 20 |
| 817 | 122.44 | radiation | 10 | 90 | < th | dose independent | rect. | 17 | 18 |
| 852 | 122.61 | humidity | 80 | 30 | < th | dose independent | rect. | 7 | 11 |
| 853 | 122.61 | radiation | 30 | 270 | < th | dose independent | rect. | 15 | 14 |
| 854 | 122.62 | radiation | 10 | 90 | < th | dose independent | no | NA | NA |
| 928 | 123.09 | radiation | 10 | 90 | < th | dose independent | rect. | 9 | 23 |
| 977 | 123.33 | radiation | 10 | 90 | > th | dose independent | rect. | 11 | 23 |