BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0717600 Os03g0717600|AK069120
         (507 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0717600  Zinc finger, C2H2-type matrin domain containin...   997   0.0  
Os01g0681600  Similar to Splicing factor 3A subunit 3 (Splic...    70   4e-12

>Os03g0717600 Zinc finger, C2H2-type matrin domain containing protein
          Length = 507

 Score =  997 bits (2577), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/507 (95%), Positives = 484/507 (95%)

Query: 1   MASTVLEATRAKHEDMERLERLAVRELQREPANARDRLYQSHRVRHMLDLVISTSGKLVE 60
           MASTVLEATRAKHEDMERLERLAVRELQREPANARDRLYQSHRVRHMLDLVISTSGKLVE
Sbjct: 1   MASTVLEATRAKHEDMERLERLAVRELQREPANARDRLYQSHRVRHMLDLVISTSGKLVE 60

Query: 61  IYEDKDNARKDEISNHLSSTVQAEIFPKFYDRLKEIRDYHRRNPSARFVSATDDFEELLK 120
           IYEDKDNARKDEISNHLSSTVQAEIFPKFYDRLKEIRDYHRRNPSARFVSATDDFEELLK
Sbjct: 61  IYEDKDNARKDEISNHLSSTVQAEIFPKFYDRLKEIRDYHRRNPSARFVSATDDFEELLK 120

Query: 121 EEPAIEFTGEEAFGRYLDLHELYNEFINSKFGTPMEYSAYVGTFSHVEKMAQNLKTSRQY 180
           EEPAIEFTGEEAFGRYLDLHELYNEFINSKFGTPMEYSAYVGTFSHVEKMAQNLKTSRQY
Sbjct: 121 EEPAIEFTGEEAFGRYLDLHELYNEFINSKFGTPMEYSAYVGTFSHVEKMAQNLKTSRQY 180

Query: 181 REYLEHILEYLTSFLYHTEPLQDIEKIFAKLESEFEEQWINGEVPGWESKDPEKESAQES 240
           REYLEHILEYLTSFLYHTEPLQDIEKIFAKLESEFEEQWINGEVPGWESKDPEKESAQES
Sbjct: 181 REYLEHILEYLTSFLYHTEPLQDIEKIFAKLESEFEEQWINGEVPGWESKDPEKESAQES 240

Query: 241 VIDLDYYTTVEELVELGPEKLKEALAARGLKSGGTVQQRAERLFLLKHTPLEQLDRKHFA 300
           VIDLDYYTTVEELVELGPEKLKEALAARGLKSGGTVQQRAERLFLLKHTPLEQLDRKHFA
Sbjct: 241 VIDLDYYTTVEELVELGPEKLKEALAARGLKSGGTVQQRAERLFLLKHTPLEQLDRKHFA 300

Query: 301 KGSHSSVSNATSNGNNFKDNLKKEIALMEVKMRRLCELLDEIIVRTKENAEKKLTLTYXX 360
           KGSHSSVSNATSNGNNFKDNLKKEIALMEVKMRRLCELLDEIIVRTKENAEKKLTLTY  
Sbjct: 301 KGSHSSVSNATSNGNNFKDNLKKEIALMEVKMRRLCELLDEIIVRTKENAEKKLTLTYEE 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNH 420
                                QIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNH
Sbjct: 361 MEAEREEEEVQADSESDDEDQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNH 420

Query: 421 SYWGRRAYERHFKEWRHQHGMRCLGIPNTKNFNEITSIQEAKELWEKIQQRQGLNKWRPD 480
           SYWGRRAYERHFKEWRHQHGMRCLGIPNTKNFNEITSIQEAKELWEKIQQRQGLNKWRPD
Sbjct: 421 SYWGRRAYERHFKEWRHQHGMRCLGIPNTKNFNEITSIQEAKELWEKIQQRQGLNKWRPD 480

Query: 481 LEEEYEDQEGNIYNKKTYTDLQRQGLI 507
           LEEEYEDQEGNIYNKKTYTDLQRQGLI
Sbjct: 481 LEEEYEDQEGNIYNKKTYTDLQRQGLI 507



>Os01g0681600 Similar to Splicing factor 3A subunit 3 (Spliceosome associated
           protein 61) (SAP 61) (SF3a60)
          Length = 444

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 45/62 (72%)

Query: 242 IDLDYYTTVEELVELGPEKLKEALAARGLKSGGTVQQRAERLFLLKHTPLEQLDRKHFAK 301
           +DL  Y++  EL  LG E+LK  L  RGLK GGT+Q+RA RLFLLK TPLE+L +K FAK
Sbjct: 379 LDLTIYSSAAELEVLGMERLKLELQNRGLKCGGTLQERAARLFLLKTTPLEKLPKKLFAK 438

Query: 302 GS 303
            S
Sbjct: 439 PS 440



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,480,609
Number of extensions: 694642
Number of successful extensions: 1918
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1917
Number of HSP's successfully gapped: 2
Length of query: 507
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 402
Effective length of database: 11,553,331
Effective search space: 4644439062
Effective search space used: 4644439062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)