Os03g0717600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type matrin domain containing protein.
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Os03g0717600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, C2H2-type matrin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.95 | 0.274 | 11.9 | 0.28 | 0.457 | 0.314 | 0.172 | -6.09 | 0.155 | 19.9 | 29.89 | 2696 | -- | -- |
| 36.42 | 0.281 | 11.8 | 1.3 | 0.469 | -0.342 | -0.123 | -- | 0.245 | 19.5 | 29.72 | 2745 | -- | -- |
| 34.03 | 0.272 | 11.9 | 0.267 | 0.458 | 0.322 | -- | -6.15 | 0.155 | 19.9 | 29.86 | 2668 | -- | -- |
| 35.61 | 0.278 | 11.8 | 1.31 | 0.464 | -0.395 | -- | -- | 0.165 | 19.8 | 30.3 | 2682 | -- | -- |
| 45.14 | 0.313 | 11.9 | -0.000914 | -- | 0.434 | -- | -6.89 | 0.105 | -- | 29.2 | 2800 | -- | -- |
| 41.89 | 0.303 | 11.8 | 1.19 | 0.468 | -- | 0.15 | -- | 0.233 | 19.5 | -- | -- | -- | -- |
| 41.95 | 0.303 | 11.8 | 1.19 | 0.468 | -- | -- | -- | 0.233 | 19.5 | -- | -- | -- | -- |
| 46.26 | 0.317 | 11.8 | 1.3 | -- | -0.376 | -- | -- | 0.178 | -- | 29.8 | 5777 | -- | -- |
| 77.91 | 0.411 | 11.8 | -- | 0.461 | -0.207 | -- | -- | 0.0602 | 19.8 | 30.7 | 3380 | -- | -- |
| 53.67 | 0.342 | 11.8 | 1.18 | -- | -- | -- | -- | 0.226 | -- | -- | -- | -- | -- |
| 79.32 | 0.417 | 11.8 | -- | 0.458 | -- | -- | -- | 0.101 | 19.7 | -- | -- | -- | -- |
| 66.74 | 0.38 | 11.8 | -- | -- | 0.786 | -- | -- | -0.141 | -- | 6.478 | 47520 | -- | -- |
| 90.62 | 0.444 | 11.8 | -- | -- | -- | -- | -- | 0.0947 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.23 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 2 | 32.40 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 3 | 32.42 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 5 |
| 4 | 32.45 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 13 | 32.76 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 7 |
| 27 | 32.95 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 14 |
| 40 | 33.09 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 45 | 33.16 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 88 | 33.37 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 94 | 33.42 | wind | 1 | 4320 | < th | dose independent | rect. | 2 | 4 |
| 110 | 33.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 114 | 33.53 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 118 | 33.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 135 | 33.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 142 | 33.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 155 | 33.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 205 | 33.71 | temperature | 30 | 1440 | > th | dose independent | sin | 8 | NA |
| 216 | 33.73 | temperature | 30 | 1440 | < th | dose independent | sin | 8 | NA |
| 221 | 33.74 | wind | 1 | 4320 | > th | dose independent | rect. | 2 | 4 |
| 236 | 33.78 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 319 | 34.01 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 320 | 34.01 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 327 | 34.03 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 359 | 34.09 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 3 |
| 360 | 34.09 | temperature | 30 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 383 | 34.12 | wind | 1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 400 | 34.16 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 409 | 34.17 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 457 | 34.22 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 472 | 34.25 | temperature | 30 | 1440 | > th | dose dependent | sin | 7 | NA |
| 479 | 34.27 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 10 |
| 481 | 34.27 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 12 |
| 483 | 34.28 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 497 | 34.30 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 506 | 34.32 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 556 | 34.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 562 | 34.40 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 680 | 34.48 | wind | 7 | 43200 | > th | dose independent | sin | 13 | NA |
| 713 | 34.51 | wind | 1 | 4320 | < th | dose dependent | rect. | 2 | 4 |
| 766 | 34.55 | wind | 7 | 43200 | < th | dose independent | sin | 13 | NA |
| 782 | 34.56 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 790 | 34.57 | wind | 7 | 43200 | > th | dose dependent | sin | 13 | NA |
| 808 | 34.58 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 815 | 34.59 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 821 | 34.59 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 849 | 34.59 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 22 |
| 886 | 34.61 | temperature | 30 | 4320 | > th | dose dependent | sin | 18 | NA |
| 893 | 34.61 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |