BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0717600 Os03g0717600|AK069120
         (507 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06160.1  | chr5:1862623-1866298 REVERSE LENGTH=505            639   0.0  
AT4G01000.1  | chr4:432186-433727 REVERSE LENGTH=416               49   6e-06

>AT5G06160.1 | chr5:1862623-1866298 REVERSE LENGTH=505
          Length = 504

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/508 (63%), Positives = 392/508 (77%), Gaps = 5/508 (0%)

Query: 1   MASTVLEATRAKHEDMERLERLAVRELQREPANARDRLYQSHRVRHMLDLVISTSGKLVE 60
           M+ST+LE TR+ HE++ERLERL V +LQ+EP +++DRL Q HRVRHM++ ++ T+ KLVE
Sbjct: 1   MSSTLLEQTRSNHEEVERLERLVVEDLQKEPPSSKDRLVQGHRVRHMIESIMLTTEKLVE 60

Query: 61  IYEDKDNARKDEISNHLSSTVQA-EIFPKFYDRLKEIRDYHRRNPSARFVSATDDFEELL 119
            YEDKD A  DEI+     T     +F +FYDRLKEIR+YH+R+PS R V A +D+E  L
Sbjct: 61  TYEDKDGAWDDEIAALGGQTATGTNVFSEFYDRLKEIREYHKRHPSGRLVDANEDYEARL 120

Query: 120 KEEPAIEFTGEEAFGRYLDLHELYNEFINSKFGTPMEYSAYVGTFSHVEKMAQNLKTSRQ 179
           KEEP I F+GEE  GRYLDLH++YN++INSKFG  +EYSAY+  FS  EK+ + LK SRQ
Sbjct: 121 KEEPIIAFSGEEGNGRYLDLHDMYNQYINSKFGERVEYSAYLDVFSQPEKIPRKLKLSRQ 180

Query: 180 YREYLEHILEYLTSFLYHTEPLQDIEKIFAKLESEFEEQWINGEVPGWESKDPEKESAQE 239
           Y +Y+E +LEYL  F   TEPLQD+++I +K+ S+FEEQ+ +G V G    D E   +Q 
Sbjct: 181 YMKYMEALLEYLVYFFQRTEPLQDLDRILSKVCSDFEEQYADGIVEGL---DNELIPSQH 237

Query: 240 SVIDLDYYTTVEELVELGPEKLKEALAARGLKSGGTVQQRAERLFLLKHTPLEQLDRKHF 299
           +VIDLDYY+TVEELV++GPEKLKEAL A GLK GGT QQRAERLFL KHTPLE+LD+KHF
Sbjct: 238 TVIDLDYYSTVEELVDVGPEKLKEALGALGLKVGGTPQQRAERLFLTKHTPLEKLDKKHF 297

Query: 300 AKGSHSSVSNATSNGNNFKDNLKKEIALMEVKMRRLCELLDEIIVRTKENAEKKLTLTYX 359
           A+  H+   N  +   +  +N  KEIAL E K+++LC LLDE I RTK+N  KK +LTY 
Sbjct: 298 ARPPHNGKQNGDAKSTHESEN-AKEIALTEAKVKKLCNLLDETIERTKQNIVKKQSLTYE 356

Query: 360 XXXXXXXXXXXXXXXXXXXXXXQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 419
                                  IYNPLKLP+GWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 357 EMEGEREGEEANTELESDDEDGLIYNPLKLPIGWDGKPIPYWLYKLHGLGQEFKCEICGN 416

Query: 420 HSYWGRRAYERHFKEWRHQHGMRCLGIPNTKNFNEITSIQEAKELWEKIQQRQGLNKWRP 479
           +SYWGRRA+ERHFKEWRHQHGMRCLGIPNTKNFNEITSI+EAKELW++IQ+RQG+NKWRP
Sbjct: 417 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKRIQERQGVNKWRP 476

Query: 480 DLEEEYEDQEGNIYNKKTYTDLQRQGLI 507
           +LEEEYED+EGNIYNKKTY+DLQRQGLI
Sbjct: 477 ELEEEYEDREGNIYNKKTYSDLQRQGLI 504



>AT4G01000.1 | chr4:432186-433727 REVERSE LENGTH=416
          Length = 415

 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 34/48 (70%)

Query: 242 IDLDYYTTVEELVELGPEKLKEALAARGLKSGGTVQQRAERLFLLKHT 289
           ++ D + +  ++  LG E+LK  L +RGLK GGT+++RA RLFLLK T
Sbjct: 355 LNFDDFNSPADMEVLGMERLKTELQSRGLKCGGTLRERAARLFLLKST 402



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,119,747
Number of extensions: 487749
Number of successful extensions: 1585
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1581
Number of HSP's successfully gapped: 3
Length of query: 507
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 404
Effective length of database: 8,282,721
Effective search space: 3346219284
Effective search space used: 3346219284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)