Os01g0681600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Splicing factor 3A subunit 3 (Spliceosome associated protein 61) (SAP 61) (SF3a60).
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Os01g0681600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Splicing factor 3A subunit 3 (Spliceosome associated protein 61) (SAP 61) (SF3a60).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.99 | 0.308 | 12.6 | 0.606 | 1.37 | -0.893 | 0.272 | -0.864 | 0.473 | 2 | 23 | 261 | -- | -- |
| 43.71 | 0.308 | 12.6 | 0.561 | 1.34 | -0.655 | 0.192 | -- | 0.477 | 2.01 | 23.63 | 342 | -- | -- |
| 43.23 | 0.306 | 12.6 | 0.584 | 1.37 | -0.866 | -- | -0.698 | 0.472 | 2 | 23.01 | 277 | -- | -- |
| 43.66 | 0.308 | 12.6 | 0.518 | 1.35 | -0.711 | -- | -- | 0.45 | 2.05 | 23.6 | 341 | -- | -- |
| 128.66 | 0.528 | 12.6 | 0.29 | -- | -1.26 | -- | 0.0939 | 0.265 | -- | 27.66 | 1011 | -- | -- |
| 50.16 | 0.332 | 12.5 | 0.683 | 1.29 | -- | 0.136 | -- | 0.562 | 1.92 | -- | -- | -- | -- |
| 50.23 | 0.332 | 12.5 | 0.679 | 1.29 | -- | -- | -- | 0.561 | 1.92 | -- | -- | -- | -- |
| 128.35 | 0.528 | 12.6 | 0.376 | -- | -1.21 | -- | -- | 0.325 | -- | 28.16 | 1007 | -- | -- |
| 47.36 | 0.321 | 12.6 | -- | 1.28 | -0.849 | -- | -- | 0.372 | 1.78 | 22.7 | 3248 | -- | -- |
| 151.41 | 0.575 | 12.5 | 0.733 | -- | -- | -- | -- | 0.591 | -- | -- | -- | -- | -- |
| 62.4 | 0.37 | 12.6 | -- | 1.31 | -- | -- | -- | 0.486 | 1.93 | -- | -- | -- | -- |
| 131.58 | 0.534 | 12.6 | -- | -- | -1.36 | -- | -- | 0.25 | -- | 28 | 1015 | -- | -- |
| 165.57 | 0.601 | 12.5 | -- | -- | -- | -- | -- | 0.51 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.09 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 3 |
| 2 | 40.21 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 6 |
| 26 | 40.92 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 14 |
| 38 | 41.12 | temperature | 25 | 720 | < th | dose dependent | sin | 15 | NA |
| 40 | 41.13 | temperature | 25 | 270 | < th | dose dependent | sin | 12 | NA |
| 45 | 41.22 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 8 |
| 54 | 41.31 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 13 |
| 127 | 41.81 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 14 |
| 146 | 41.89 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 10 |
| 154 | 41.92 | temperature | 10 | 270 | > th | dose dependent | sin | 13 | NA |
| 168 | 41.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 8 |
| 169 | 41.97 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 14 |
| 219 | 42.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 241 | 42.16 | temperature | 10 | 10 | > th | dose dependent | sin | 11 | NA |
| 316 | 42.32 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 7 |
| 322 | 42.33 | temperature | 20 | 90 | > th | dose independent | rect. | 18 | 14 |
| 342 | 42.36 | temperature | 20 | 30 | > th | dose independent | sin | 11 | NA |
| 348 | 42.37 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 5 |
| 372 | 42.40 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 9 |
| 386 | 42.42 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 7 |
| 420 | 42.47 | temperature | 20 | 10 | < th | dose independent | sin | 10 | NA |
| 466 | 42.53 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 17 |
| 500 | 42.58 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 22 |
| 513 | 42.59 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 12 |
| 540 | 42.63 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 9 |
| 552 | 42.64 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 8 |
| 591 | 42.68 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 10 |
| 620 | 42.71 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 14 |
| 773 | 42.87 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 1 |
| 809 | 42.90 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 835 | 42.93 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 855 | 42.95 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 9 |