BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0681600 Os01g0681600|AK067869
(444 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G01000.1 | chr4:432186-433727 REVERSE LENGTH=416 119 4e-27
AT3G06455.1 | chr3:1980885-1982055 FORWARD LENGTH=346 65 9e-11
>AT4G01000.1 | chr4:432186-433727 REVERSE LENGTH=416
Length = 415
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 11/190 (5%)
Query: 8 QILVRLLDGRTRCLRFSTTTVSGAALLDAVSALSRVPAASLRLVTGRLDVSPSSVLASSA 67
Q VRLLDG++ L FS+ G + + +++P RL++G +S S ++
Sbjct: 10 QFFVRLLDGKSLTLSFSSPLAYGEQIKQRIFEQTKIPTHLQRLISGGYQISDGSAISQ-- 67
Query: 68 DGRFPSASAXXXXXXXXXX--XXXXXXXAASKAGQKKTSNFDACRDINGRRLRHVNAERR 125
P A+ KAGQKKT+NFDACRD++GRRLRHVNAE R
Sbjct: 68 ----PDATVNLVLSLRGGKGGFGSLLRGGGMKAGQKKTNNFDACRDMSGRRLRHVNAENR 123
Query: 126 LEEWKAEAADRQLEKLAEDFIKKKAKEAGRGGVKAAEVDKYLEKYRKDAESCVNAVEESV 185
L+EWK R LEK A +++KK++ + + GV KY+ KY+++++ C+ AV+ ++
Sbjct: 124 LQEWKDGEEGRNLEKKALEYLKKQSNKV-KQGVGNGATQKYVNKYKEESDKCILAVDLAL 182
Query: 186 RASL--GKRK 193
S GKRK
Sbjct: 183 NESFKNGKRK 192
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 38/43 (88%)
Query: 377 EPLDLTIYSSAAELEVLGMERLKLELQNRGLKCGGTLQERAAR 419
EPL+ ++S A++EVLGMERLK ELQ+RGLKCGGTL+ERAAR
Sbjct: 353 EPLNFDDFNSPADMEVLGMERLKTELQSRGLKCGGTLRERAAR 395
>AT3G06455.1 | chr3:1980885-1982055 FORWARD LENGTH=346
Length = 345
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 36/43 (83%)
Query: 377 EPLDLTIYSSAAELEVLGMERLKLELQNRGLKCGGTLQERAAR 419
EPL+ + +A ++EVLGMERLK ELQ+RGLKC GTL+ERAAR
Sbjct: 283 EPLNFAEFKAATDMEVLGMERLKTELQSRGLKCRGTLRERAAR 325
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 8 QILVRLLDGRTRCLRFSTTTVSGAALLDAVSALSRVPAASLRLVTGRLDVSPSSVLASSA 67
Q VRLLDG++ L FS+ G + + +++P RL++G + +S ++ S
Sbjct: 10 QFFVRLLDGKSVTLTFSSPIACGEQIKQRIFEQTKIPTHLQRLISGGFQIPGASAISQSD 69
Query: 68 DGRFPSASAXXXXXXXXXXXXXXXXXAASKAGQKKTSNFDAC 109
+ + KAGQKKT+NFD+C
Sbjct: 70 ----TTMNLVLSLRGGKGGLGSLLRNVVMKAGQKKTNNFDSC 107
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.309 0.127 0.344
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,442,360
Number of extensions: 253964
Number of successful extensions: 823
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 821
Number of HSP's successfully gapped: 4
Length of query: 444
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 342
Effective length of database: 8,310,137
Effective search space: 2842066854
Effective search space used: 2842066854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 113 (48.1 bits)