BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0712700 Os03g0712700|AK072313
(582 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0712700 Similar to Phosphoglucomutase, cytoplasmic 2 (... 1194 0.0
Os10g0189100 Similar to Phosphoglucomutase, chloroplast pre... 683 0.0
AK109060 551 e-157
>Os03g0712700 Similar to Phosphoglucomutase, cytoplasmic 2 (EC 5.4.2.2) (Glucose
phosphomutase 2) (PGM 2)
Length = 582
Score = 1194 bits (3090), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 582/582 (100%), Positives = 582/582 (100%)
Query: 1 MVLFSVTKKATTPFDGQKPGTSGLRKKVTVFQQPHYLQNFVQSTFNALPADKVKGATIVV 60
MVLFSVTKKATTPFDGQKPGTSGLRKKVTVFQQPHYLQNFVQSTFNALPADKVKGATIVV
Sbjct: 1 MVLFSVTKKATTPFDGQKPGTSGLRKKVTVFQQPHYLQNFVQSTFNALPADKVKGATIVV 60
Query: 61 SGDGRYFSKDAVQIITKMAAANGVRRVWVGQNSLMSTPAVSAVIRERVGADGSKATGAFI 120
SGDGRYFSKDAVQIITKMAAANGVRRVWVGQNSLMSTPAVSAVIRERVGADGSKATGAFI
Sbjct: 61 SGDGRYFSKDAVQIITKMAAANGVRRVWVGQNSLMSTPAVSAVIRERVGADGSKATGAFI 120
Query: 121 LTASHNPGGPTEDFGIKYNMENGGPAPESVTDKIFSNTTTITEYLIAEDLPDVDISVVGV 180
LTASHNPGGPTEDFGIKYNMENGGPAPESVTDKIFSNTTTITEYLIAEDLPDVDISVVGV
Sbjct: 121 LTASHNPGGPTEDFGIKYNMENGGPAPESVTDKIFSNTTTITEYLIAEDLPDVDISVVGV 180
Query: 181 TTFSGPEGPFDVDVFDSTIDYIKLMKTIFDFESIKKLLASPKFTFCYDALHGVAGTYATR 240
TTFSGPEGPFDVDVFDSTIDYIKLMKTIFDFESIKKLLASPKFTFCYDALHGVAGTYATR
Sbjct: 181 TTFSGPEGPFDVDVFDSTIDYIKLMKTIFDFESIKKLLASPKFTFCYDALHGVAGTYATR 240
Query: 241 IFVEELGAAESSLLNCVPKEDFGGGHPDPNLTYAKELVDRMGLGKSSNAEPPEFGAAADG 300
IFVEELGAAESSLLNCVPKEDFGGGHPDPNLTYAKELVDRMGLGKSSNAEPPEFGAAADG
Sbjct: 241 IFVEELGAAESSLLNCVPKEDFGGGHPDPNLTYAKELVDRMGLGKSSNAEPPEFGAAADG 300
Query: 301 DADRNMILGKRFFVTPSDSVAIIAANAVQSIPYFSSGLKGVARSMPTSAALDVVAKNLNL 360
DADRNMILGKRFFVTPSDSVAIIAANAVQSIPYFSSGLKGVARSMPTSAALDVVAKNLNL
Sbjct: 301 DADRNMILGKRFFVTPSDSVAIIAANAVQSIPYFSSGLKGVARSMPTSAALDVVAKNLNL 360
Query: 361 KFFEVPTGWKFFGNLMDAGMCSICGEESFGTGSDHIREKDGIWAVLAWLSILAFKNKDNL 420
KFFEVPTGWKFFGNLMDAGMCSICGEESFGTGSDHIREKDGIWAVLAWLSILAFKNKDNL
Sbjct: 361 KFFEVPTGWKFFGNLMDAGMCSICGEESFGTGSDHIREKDGIWAVLAWLSILAFKNKDNL 420
Query: 421 GGDKLVTVEDIVRQHWGTYGRHYYTRYDYENVDAGAAKELMANLVSMQSSLSDVNKLIKE 480
GGDKLVTVEDIVRQHWGTYGRHYYTRYDYENVDAGAAKELMANLVSMQSSLSDVNKLIKE
Sbjct: 421 GGDKLVTVEDIVRQHWGTYGRHYYTRYDYENVDAGAAKELMANLVSMQSSLSDVNKLIKE 480
Query: 481 IRSDVSDVVAADEFEYKDPVDGSVSKHQGVRYLFGDGSRLVFRLSGTGSVGATIRVYIEQ 540
IRSDVSDVVAADEFEYKDPVDGSVSKHQGVRYLFGDGSRLVFRLSGTGSVGATIRVYIEQ
Sbjct: 481 IRSDVSDVVAADEFEYKDPVDGSVSKHQGVRYLFGDGSRLVFRLSGTGSVGATIRVYIEQ 540
Query: 541 YEKDSSKTGRDSQDALAPLVDVALKLSKMQEYTGRSAPTVIT 582
YEKDSSKTGRDSQDALAPLVDVALKLSKMQEYTGRSAPTVIT
Sbjct: 541 YEKDSSKTGRDSQDALAPLVDVALKLSKMQEYTGRSAPTVIT 582
>Os10g0189100 Similar to Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)
(Glucose phosphomutase) (PGM)
Length = 609
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/572 (60%), Positives = 433/572 (75%), Gaps = 22/572 (3%)
Query: 11 TTPFDGQKPGTSGLRKKVTVFQQPHYLQNFVQSTFNALPADKVKGATIVVSGDGRYFSKD 70
T P +GQK GTSGLRKKV VFQQ +YL N++Q+ FN+LP + G T+V+ GDGRYF+KD
Sbjct: 60 TKPVEGQKTGTSGLRKKVKVFQQENYLANWIQALFNSLPPEDYVGGTLVLGGDGRYFNKD 119
Query: 71 AVQIITKMAAANGVRRVWVGQNSLMSTPAVSAVIRERVGADGSKATGAFILTASHNPGGP 130
A QIITK+AA NGV ++ VG+N L+STPAVSAVIR+R +A G FI++ASHNPGGP
Sbjct: 120 AAQIITKIAAGNGVGKILVGRNGLLSTPAVSAVIRKR------QANGGFIMSASHNPGGP 173
Query: 131 TEDFGIKYNMENGGPAPESVTDKIFSNTTTITEYLIAEDLPDVDISVVGVTTFSGPEGPF 190
D+GIK+N +G PAPE++TD+I+ NT +I+E A D+PDVD+S +GV ++ G F
Sbjct: 174 DNDWGIKFNYSSGQPAPETITDQIYGNTLSISEIKTA-DIPDVDLSSLGVVSY----GDF 228
Query: 191 DVDVFDSTIDYIKLMKTIFDFESIKKLLASPKFTFCYDALHGVAGTYATRIFVEELGAAE 250
V+V D +DY++LM+ +FDF+ IK LL+ P F F +DA+H V G YA IFVE+LGA
Sbjct: 229 TVEVIDPVLDYLELMENVFDFQLIKGLLSRPDFRFVFDAMHAVTGAYADPIFVEKLGADP 288
Query: 251 SSLLNCVPKEDFGGGHPDPNLTYAKELVDRMGLGKSSNAEPPEFGAAADGDADRNMILGK 310
+LN VP EDFG GHPDPNLTYAKELV M G + P+FGAA+DGD DRNMILG+
Sbjct: 289 DYILNGVPLEDFGNGHPDPNLTYAKELVFTM-FGSGA----PDFGAASDGDGDRNMILGR 343
Query: 311 RFFVTPSDSVAIIAANAVQSIPYFSSGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWK 370
RFFVTPSDSVAIIAANA +IPYF SG KG+ARSMPTS ALD VA LN+ FFEVPTGWK
Sbjct: 344 RFFVTPSDSVAIIAANAQAAIPYFQSGPKGLARSMPTSGALDRVADKLNVPFFEVPTGWK 403
Query: 371 FFGNLMDAGMCSICGEESFGTGSDHIREKDGIWAVLAWLSILAFKNKDNLGGDKLVTVED 430
FFGNLMDAG SICGEESFGTGSDHIREKDGIWAVLAWLSILA +NKD G++LV+VED
Sbjct: 404 FFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSILAHRNKDKKAGERLVSVED 463
Query: 431 IVRQHWGTYGRHYYTRYDYENVDAGAAKELMANLVSMQSSLSDVNKLIKEIRSDVSDVVA 490
+ R+HW TYGR++++RYDYE ++ +A ++M +L + + K +
Sbjct: 464 VAREHWATYGRNFFSRYDYEECESESANKMMEHLRDVIAKSKPGEKYGNYT------LQF 517
Query: 491 ADEFEYKDPVDGSVSKHQGVRYLFGDGSRLVFRLSGTGSVGATIRVYIEQYEKDSSKTGR 550
AD+F Y DPVDGS QG+R++F DGSR++FRLSGTGS GATIR+YIEQ+E D+SK
Sbjct: 518 ADDFSYTDPVDGSTVSKQGLRFVFTDGSRIIFRLSGTGSAGATIRIYIEQFESDASKHDL 577
Query: 551 DSQDALAPLVDVALKLSKMQEYTGRSAPTVIT 582
D+Q AL PL+D+AL +SK++++TGR PTVIT
Sbjct: 578 DAQIALKPLIDLALSVSKLKDFTGRDKPTVIT 609
>AK109060
Length = 554
Score = 551 bits (1421), Expect = e-157, Method: Compositional matrix adjust.
Identities = 295/574 (51%), Positives = 386/574 (67%), Gaps = 33/574 (5%)
Query: 13 PFDGQKPGTSGLRKKVTVFQQPHYLQNFVQSTFNALPADKVKGATIVVSGDGRYFSKDAV 72
PF QKPGTSGLRKKV VFQQ HY + FV S ++P + V G+T+V+ GDGRY++ +
Sbjct: 10 PFQDQKPGTSGLRKKVKVFQQDHYSEAFVTSILLSIP-EGVSGSTLVIGGDGRYWNPEVT 68
Query: 73 QIITKMAAANGVRRVWVGQNSLMSTPAVSAVIRERVGADGSKATGAFILTASHNPGGPTE 132
Q+I K+ AA GV+++ +GQN ++STPA S +IR R KATG +LTASHNPGGPTE
Sbjct: 69 QLIAKIGAAYGVKKLLIGQNGILSTPAASHIIRIR------KATGGILLTASHNPGGPTE 122
Query: 133 DFGIKYNMENGGPAPESVTDKIFSNTTTITEYLIAEDLPDVDISVVGVTTFSGPEGPFDV 192
DFGIKYN+ NG PAPESVT+KI+ + T+T Y IA D+PDVD+ +G + G +V
Sbjct: 123 DFGIKYNLANGAPAPESVTNKIYETSKTLTSYKIA-DIPDVDLKSIGTQKY----GDLEV 177
Query: 193 DVFDSTIDYIKLMKTIFDFESIKKLLAS-PKFTFCYDALHGVAGTYATRIFVEELGAAES 251
++ DST DY++++K IFDF+ IK L F +D L GV G+Y IF +ELG S
Sbjct: 178 EILDSTKDYLQMLKDIFDFDLIKSFLKQHSDFKVLFDGLSGVTGSYGVDIFEKELGIPNS 237
Query: 252 SLLNCVPKEDFGGGHPDPNLTYAKELVDRMGLGKSSNAEPPEFGAAADGDADRNMILGKR 311
+ NCVPK DFGG HPDPNL YAK LVD + + FGAA+DGD DRNMI G +
Sbjct: 238 TQ-NCVPKPDFGGHHPDPNLVYAKSLVDAV------DKNGIHFGAASDGDGDRNMIYGAK 290
Query: 312 FFVTPSDSVAIIAANAVQSIPYFS-SGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWK 370
FV+P DS+AIIA +A + IPYF G+ G+ARSMPTS A+D+VAK ++ +EVPTGWK
Sbjct: 291 SFVSPGDSLAIIAHHA-ELIPYFKKQGIYGLARSMPTSGAIDLVAKKKGVECYEVPTGWK 349
Query: 371 FFGNLMDAGMCSICGEESFGTGSDHIREKDGIWAVLAWLSILAFKNKDNLGGDKLVTVED 430
FF L D+ +ICGEESFGTGS+HIREKDG+WAV+AWL+ILA + + +V+
Sbjct: 350 FFCGLFDSDKMNICGEESFGTGSNHIREKDGLWAVVAWLNILAGVGQQTGTTPSIASVQ- 408
Query: 431 IVRQHWGTYGRHYYTRYDYENVDAGAAKELMANLVSMQSSLSDVNKLIKEIRSDVS--DV 488
+ W TYGR ++TRYDYE + A ++ ++ + ++ D + I S V+ V
Sbjct: 409 --KDFWKTYGRTFFTRYDYEGCETEGANKVTGHMKELITTKKD-----EFIGSSVAGRKV 461
Query: 489 VAADEFEYKDPVDGSVSKHQGVRYLFGDGSRLVFRLSGTGSVGATIRVYIEQYEKDSSKT 548
V AD+F Y D +DGSVSK+QG+ F DGSR+V RLSGTGS GATIR+YIE++ D S
Sbjct: 462 VEADDFSYTD-LDGSVSKNQGIYVKFDDGSRIVVRLSGTGSSGATIRLYIEKHTSDESTY 520
Query: 549 GRDSQDALAPLVDVALKLSKMQEYTGRSAPTVIT 582
D+QD L V +A L K+QEY GR+ P V T
Sbjct: 521 DMDAQDYLKDNVKLATDLLKLQEYIGRTEPDVKT 554
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,460,782
Number of extensions: 921011
Number of successful extensions: 2009
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1995
Number of HSP's successfully gapped: 3
Length of query: 582
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 476
Effective length of database: 11,501,117
Effective search space: 5474531692
Effective search space used: 5474531692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)