Os10g0189100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2) (Glucose phosphomutase) (PGM).
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Os10g0189100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2) (Glucose phosphomutase) (PGM).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.33 | 0.464 | 13.6 | -2.04 | 1.62 | 1.03 | 0.545 | -0.836 | -0.634 | 9.87 | 82.26 | 1219 | -- | -- |
| 97.9 | 0.461 | 13.6 | -1.95 | 1.67 | 1.01 | 0.585 | -- | -0.631 | 9.86 | 86.02 | 1153 | -- | -- |
| 98.37 | 0.462 | 13.6 | -2.04 | 1.62 | 1.05 | -- | -1.05 | -0.636 | 9.94 | 82.41 | 1210 | -- | -- |
| 99.4 | 0.464 | 13.6 | -1.92 | 1.68 | 1.02 | -- | -- | -0.636 | 9.95 | 86.5 | 1155 | -- | -- |
| 219.68 | 0.694 | 13.6 | -1.82 | -- | 1.06 | -- | -1.88 | -0.653 | -- | 153.4 | 2 | -- | -- |
| 118.25 | 0.51 | 13.6 | -1.82 | 1.49 | -- | 0.63 | -- | -0.646 | 9.5 | -- | -- | -- | -- |
| 119.66 | 0.512 | 13.6 | -1.8 | 1.49 | -- | -- | -- | -0.645 | 9.59 | -- | -- | -- | -- |
| 224.97 | 0.702 | 13.6 | -1.83 | -- | 0.966 | -- | -- | -0.609 | -- | 86.5 | 1155 | -- | -- |
| 154.67 | 0.579 | 13.5 | -- | 1.48 | 1.41 | -- | -- | -0.307 | 9.61 | 68.8 | 47520 | -- | -- |
| 250.53 | 0.74 | 13.6 | -1.81 | -- | -- | -- | -- | -0.641 | -- | -- | -- | -- | -- |
| 204.98 | 0.67 | 13.5 | -- | 1.49 | -- | -- | -- | -0.444 | 9.68 | -- | -- | -- | -- |
| 284.86 | 0.786 | 13.5 | -- | -- | 1.43 | -- | -- | -0.302 | -- | 69 | 47520 | -- | -- |
| 337.02 | 0.857 | 13.6 | -- | -- | -- | -- | -- | -0.44 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.80 | humidity | 60 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 2 | 88.86 | humidity | 50 | 720 | > th | dose dependent | sin | 16 | NA |
| 4 | 89.03 | humidity | 60 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 18 | 89.38 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 14 |
| 19 | 89.54 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 29 | 89.81 | humidity | 60 | 720 | > th | dose dependent | rect. | 11 | 15 |
| 105 | 91.24 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 14 |
| 151 | 92.12 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 152 | 92.13 | humidity | 70 | 720 | > th | dose independent | sin | 14 | NA |
| 160 | 92.24 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 16 |
| 166 | 92.27 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 7 |
| 177 | 92.39 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 19 |
| 191 | 92.53 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 5 |
| 216 | 92.79 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 9 |
| 241 | 93.10 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 13 |
| 283 | 93.46 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 14 |
| 305 | 93.64 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 355 | 94.14 | radiation | 10 | 720 | < th | dose dependent | sin | 16 | NA |
| 361 | 94.18 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 367 | 94.23 | radiation | 1 | 720 | < th | dose independent | sin | 19 | NA |
| 374 | 94.24 | radiation | 10 | 720 | < th | dose dependent | rect. | 9 | 17 |
| 378 | 94.26 | humidity | 90 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 396 | 94.43 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 397 | 94.43 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 14 |
| 401 | 94.44 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 408 | 94.46 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 510 | 95.12 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 582 | 95.50 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 586 | 95.54 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 5 |
| 610 | 95.67 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 13 |
| 630 | 95.73 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 12 |
| 664 | 95.85 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 720 | 95.99 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 801 | 96.24 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 9 |
| 824 | 96.31 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 854 | 96.42 | humidity | 90 | 1440 | < th | dose dependent | rect. | 10 | 7 |
| 894 | 96.56 | humidity | 50 | 1440 | > th | dose dependent | rect. | 10 | 7 |
| 897 | 96.58 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 913 | 96.65 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 966 | 96.85 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 9 |