Os03g0712700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phosphoglucomutase, cytoplasmic 2 (EC 5.4.2.2) (Glucose phosphomutase 2) (PGM 2).
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Os03g0712700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phosphoglucomutase, cytoplasmic 2 (EC 5.4.2.2) (Glucose phosphomutase 2) (PGM 2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.19 | 0.245 | 13.4 | -1.31 | 1 | -0.635 | 0.138 | 1.02 | -0.589 | 7.31 | 3 | 7 | -- | -- |
| 43.08 | 0.306 | 13.3 | -1.26 | 0.95 | -0.178 | 0.0276 | -- | -0.474 | 6.98 | 26.54 | 8 | -- | -- |
| 42.2 | 0.303 | 13.3 | -1.22 | 0.997 | -0.222 | -- | 0.367 | -0.419 | 6.74 | 26.52 | 9 | -- | -- |
| 42.56 | 0.304 | 13.3 | -1.2 | 0.993 | -0.203 | -- | -- | -0.434 | 6.82 | 26.8 | 20 | -- | -- |
| 91.78 | 0.446 | 13.4 | -1.17 | -- | -0.255 | -- | 0.38 | -0.401 | -- | 18.35 | 33 | -- | -- |
| 44.08 | 0.311 | 13.3 | -1.2 | 1 | -- | 0.147 | -- | -0.425 | 7.2 | -- | -- | -- | -- |
| 44.14 | 0.311 | 13.3 | -1.19 | 1 | -- | -- | -- | -0.425 | 7.2 | -- | -- | -- | -- |
| 87.08 | 0.437 | 13.4 | -1.18 | -- | -0.304 | -- | -- | -0.421 | -- | 1.891 | 21 | -- | -- |
| 79.41 | 0.415 | 13.3 | -- | 1.02 | -0.326 | -- | -- | -0.285 | 6.76 | 40 | 54 | -- | -- |
| 97.5 | 0.461 | 13.4 | -1.18 | -- | -- | -- | -- | -0.408 | -- | -- | -- | -- | -- |
| 81.71 | 0.423 | 13.3 | -- | 0.992 | -- | -- | -- | -0.292 | 7.27 | -- | -- | -- | -- |
| 123.26 | 0.519 | 13.3 | -- | -- | -0.313 | -- | -- | -0.267 | -- | 5.82 | 11 | -- | -- |
| 133.96 | 0.54 | 13.3 | -- | -- | -- | -- | -- | -0.277 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.86 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 5 | 27.07 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 6 | 27.10 | radiation | 20 | 1440 | < th | dose independent | sin | 1 | NA |
| 13 | 27.17 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 16 |
| 19 | 27.18 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 21 | 27.18 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 22 | 27.18 | radiation | 20 | 1440 | < th | dose independent | rect. | 4 | 14 |
| 57 | 27.19 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 77 | 27.19 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 94 | 27.20 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 105 | 27.20 | radiation | 20 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 201 | 27.50 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 202 | 27.50 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 206 | 27.55 | radiation | 30 | 1440 | < th | dose dependent | rect. | 16 | 22 |
| 210 | 27.57 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 11 |
| 212 | 27.60 | radiation | 20 | 1440 | < th | dose dependent | sin | 2 | NA |
| 216 | 27.64 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 225 | 27.65 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 229 | 27.68 | radiation | 30 | 1440 | < th | dose dependent | rect. | 6 | 8 |
| 236 | 27.72 | radiation | 30 | 1440 | < th | dose dependent | rect. | 2 | 12 |
| 252 | 27.74 | radiation | 40 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 275 | 27.76 | radiation | 20 | 1440 | < th | dose dependent | rect. | 6 | 22 |
| 316 | 27.78 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 441 | 27.89 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 455 | 27.90 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 785 | 28.18 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 988 | 28.48 | radiation | 1 | 1440 | > th | dose dependent | rect. | 18 | 21 |
| 990 | 28.48 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 22 |