BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0710100 Os03g0710100|AK069094
         (119 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0710100  Protein kinase-like domain containing protein       240   2e-64
Os12g0640800  Similar to Serine/threonine-protein kinase PRP...   193   3e-50

>Os03g0710100 Protein kinase-like domain containing protein
          Length = 119

 Score =  240 bits (612), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   TGKILFDGSTNNDMLRLHMELKGPFPKKMLRKGAFTMQHFDQNLNFLARKKDPITKTVVN 60
           TGKILFDGSTNNDMLRLHMELKGPFPKKMLRKGAFTMQHFDQNLNFLARKKDPITKTVVN
Sbjct: 1   TGKILFDGSTNNDMLRLHMELKGPFPKKMLRKGAFTMQHFDQNLNFLARKKDPITKTVVN 60

Query: 61  RLLLNIKPKGVGSAISSCPGDDPKMISSFKDLLEKIFVLDPKKRITVPEALSHPFITAK 119
           RLLLNIKPKGVGSAISSCPGDDPKMISSFKDLLEKIFVLDPKKRITVPEALSHPFITAK
Sbjct: 61  RLLLNIKPKGVGSAISSCPGDDPKMISSFKDLLEKIFVLDPKKRITVPEALSHPFITAK 119



>Os12g0640800 Similar to Serine/threonine-protein kinase PRP4 homolog (EC
           2.7.1.37) (PRP4 pre- mRNA processing factor 4 homolog)
           (PRP4 kinase)
          Length = 227

 Score =  193 bits (490), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 91/119 (76%), Positives = 107/119 (89%)

Query: 1   TGKILFDGSTNNDMLRLHMELKGPFPKKMLRKGAFTMQHFDQNLNFLARKKDPITKTVVN 60
           TGK+LF G +NNDMLRLHMELKGPFPKKMLRKGAFTMQHFDQ+LNF A ++DP+TK  V 
Sbjct: 109 TGKVLFPGPSNNDMLRLHMELKGPFPKKMLRKGAFTMQHFDQDLNFHATEEDPVTKKAVT 168

Query: 61  RLLLNIKPKGVGSAISSCPGDDPKMISSFKDLLEKIFVLDPKKRITVPEALSHPFITAK 119
           R++LNIKPK +GS IS+ PG+DPKM+S+FKDLLEKIFVLDP+KRIT+ +ALSHPFIT K
Sbjct: 169 RMILNIKPKDIGSLISNFPGEDPKMLSNFKDLLEKIFVLDPEKRITISQALSHPFITGK 227



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.139    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,033,548
Number of extensions: 150563
Number of successful extensions: 501
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 501
Number of HSP's successfully gapped: 2
Length of query: 119
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 34
Effective length of database: 12,597,611
Effective search space: 428318774
Effective search space used: 428318774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)