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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0710100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.64 (0.0295) R2 : 0.00731
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.114 (0.0621) R2dN8 : 0.00945 R2N8 : 0.00731
σ : 0.555
deviance : 141.5
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
113.29 0.5 4.65 -0.716 0.466 -0.474 1.01 -0.48 0.0337 9.67 11.44 15 -- --
113.84 0.497 4.65 -0.734 0.429 -0.416 0.657 -- 0.0356 9 11.91 12 -- --
114.97 0.499 4.66 -0.707 0.446 -0.436 -- 0.0722 0.00204 9.24 12 12 -- --
114.9 0.499 4.65 -0.711 0.413 -0.405 -- -- 0.0195 8.78 11.98 12 -- --
121.46 0.513 4.66 -0.719 -- -0.264 -- 0.184 0.0226 -- 16.21 8 -- --
120.79 0.515 4.66 -0.741 0.356 -- 0.0117 -- 0.0238 4.67 -- -- -- --
120.79 0.515 4.66 -0.741 0.356 -- -- -- 0.0237 4.66 -- -- -- --
121.34 0.515 4.67 -0.714 -- -0.259 -- -- 0.0182 -- 15.97 8 -- --
127.06 0.528 4.64 -- 0.401 -0.432 -- -- 0.081 8.81 15.4 10 -- --
127.53 0.528 4.66 -0.728 -- -- -- -- 0.033 -- -- -- -- --
135.28 0.544 4.64 -- 0.342 -- -- -- 0.106 4.72 -- -- -- --
134.08 0.541 4.65 -- -- -0.282 -- -- 0.0943 -- 15.32 9 -- --
141.5 0.555 4.64 -- -- -- -- -- 0.114 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 108.20 wind 3.0 10 < th dose independent rect. 2 1
2 108.69 atmosphere 1015.0 30 < th dose dependent rect. 2 1
4 108.94 wind 9.0 10 < th dose independent rect. 3 23
5 108.95 wind 5.0 10 < th dose dependent rect. 2 1
7 108.96 temperature 10.0 10 > th dose dependent rect. 2 1
10 109.09 wind 1.0 30 > th dose independent rect. 2 1
11 109.11 temperature 30.0 30 < th dose dependent rect. 2 1
17 109.17 temperature 10.0 30 > th dose independent rect. 2 1
19 109.17 temperature 30.0 30 < th dose independent rect. 2 1
20 109.17 humidity 50.0 30 > th dose independent rect. 2 1
23 109.17 atmosphere 995.0 30 > th dose independent rect. 2 1
24 109.17 atmosphere 1010.0 30 < th dose independent rect. 2 1
26 109.17 radiation 1.0 30 < th dose independent rect. 2 1
31 109.17 precipitation 0.1 30 < th dose independent rect. 2 1
32 109.17 temperature 10.0 30 > th dose independent rect. 3 23
33 109.17 radiation 1.0 30 < th dose dependent rect. 2 1
38 109.17 precipitation 0.1 30 < th dose dependent rect. 2 1
68 109.32 humidity 50.0 30 > th dose dependent rect. 2 1
75 109.54 atmosphere 1005.0 30 > th dose independent rect. 2 1
79 109.57 atmosphere 995.0 30 > th dose dependent rect. 2 1
103 111.68 radiation 10.0 10 > th dose independent rect. 9 23
104 112.07 radiation 10.0 90 > th dose independent rect. 9 7
105 112.31 radiation 10.0 10 > th dose independent sin 22 NA
107 112.41 atmosphere 995.0 90 > th dose independent rect. 4 15
108 112.47 radiation 10.0 90 < th dose independent rect. 5 7
109 112.48 temperature 15.0 270 > th dose independent rect. 14 17
110 112.49 radiation 10.0 90 > th dose independent rect. 7 9
111 112.53 radiation 10.0 90 > th dose independent sin 0 NA
112 112.55 radiation 10.0 90 < th dose independent rect. 5 14
113 112.55 radiation 20.0 90 < th dose independent rect. 15 18
123 112.67 radiation 1.0 90 < th dose dependent sin 12 NA
125 112.71 radiation 10.0 10 > th dose independent rect. 9 7
127 112.73 precipitation 0.1 270 < th dose independent rect. 3 15
128 112.73 precipitation 0.1 270 < th dose dependent rect. 3 15
130 112.77 temperature 15.0 270 > th dose independent rect. 7 7
131 112.80 atmosphere 995.0 270 > th dose dependent rect. 2 5
149 112.86 radiation 10.0 10 < th dose independent rect. 5 14
151 112.88 radiation 1.0 270 > th dose independent rect. 7 7
155 112.91 precipitation 0.1 270 < th dose independent rect. 18 9
156 112.91 precipitation 0.1 270 < th dose dependent rect. 18 9
178 113.05 temperature 25.0 270 < th dose independent rect. 2 5
179 113.05 temperature 15.0 270 > th dose independent rect. 18 9
182 113.05 radiation 30.0 90 < th dose dependent rect. 4 15
184 113.06 atmosphere 995.0 90 > th dose dependent rect. 4 15
221 113.21 radiation 1.0 270 < th dose independent rect. 18 9
227 113.21 wind 7.0 270 < th dose independent rect. 3 15
236 113.21 radiation 10.0 270 < th dose dependent rect. 18 9
237 113.22 atmosphere 995.0 270 > th dose independent rect. 18 9
244 113.23 humidity 50.0 270 > th dose independent rect. 18 9
248 113.23 temperature 10.0 270 > th dose independent rect. 3 15
250 113.23 atmosphere 1015.0 270 < th dose independent rect. 3 15
252 113.24 radiation 10.0 270 > th dose independent rect. 9 3
253 113.24 wind 9.0 270 < th dose independent rect. 18 9
254 113.25 radiation 40.0 90 < th dose dependent rect. 15 18
288 113.37 atmosphere 1005.0 270 > th dose independent rect. 5 1
291 113.38 radiation 10.0 270 < th dose independent rect. 2 6
294 113.39 atmosphere 995.0 270 > th dose independent rect. 14 17
313 113.41 precipitation 0.1 270 < th dose independent rect. 7 7
315 113.41 precipitation 0.1 270 < th dose dependent rect. 7 7
328 113.46 radiation 20.0 10 < th dose dependent rect. 5 14
329 113.47 radiation 10.0 90 < th dose independent sin 1 NA
332 113.47 atmosphere 995.0 270 > th dose independent rect. 7 7
333 113.47 atmosphere 1015.0 270 < th dose independent rect. 7 7
340 113.48 temperature 30.0 270 < th dose independent rect. 18 9
345 113.51 wind 9.0 270 < th dose independent rect. 7 7
346 113.51 wind 9.0 270 < th dose independent rect. 14 17
352 113.52 temperature 25.0 30 > th dose dependent rect. 5 1
357 113.54 humidity 90.0 90 < th dose independent rect. 9 7
374 113.59 precipitation 0.1 270 < th dose independent rect. 14 17
377 113.59 precipitation 0.1 270 < th dose dependent rect. 14 17
417 113.62 radiation 40.0 270 < th dose independent rect. 14 17
419 113.63 radiation 10.0 10 < th dose independent rect. 5 17
428 113.66 radiation 1.0 90 < th dose independent sin 12 NA
429 113.66 humidity 70.0 90 > th dose independent rect. 4 5
430 113.66 temperature 15.0 270 > th dose independent rect. 12 21
433 113.67 atmosphere 1005.0 270 > th dose independent rect. 3 4
434 113.67 temperature 20.0 90 > th dose independent rect. 9 7
449 113.67 radiation 30.0 270 < th dose dependent rect. 2 6
451 113.68 wind 3.0 10 < th dose independent rect. 5 5
476 113.72 wind 5.0 10 < th dose dependent rect. 5 5
477 113.72 humidity 50.0 90 > th dose dependent rect. 4 6
482 113.73 radiation 10.0 10 < th dose independent rect. 5 8
484 113.73 radiation 40.0 90 < th dose dependent rect. 14 21
485 113.74 temperature 15.0 270 > th dose independent rect. 9 3
490 113.75 radiation 10.0 10 > th dose independent no NA NA
592 113.79 radiation 10.0 10 < th dose independent sin 23 NA
616 113.83 radiation 10.0 10 < th dose independent rect. 15 22
623 113.84 radiation 40.0 90 < th dose dependent rect. 4 7
636 113.86 precipitation 0.1 270 < th dose independent rect. 2 5
641 113.86 precipitation 0.1 270 < th dose dependent rect. 2 5
645 113.87 humidity 70.0 270 > th dose independent rect. 2 6
654 113.87 temperature 10.0 270 > th dose dependent rect. 4 2
656 113.87 radiation 1.0 270 < th dose dependent rect. 8 19
674 113.91 atmosphere 995.0 270 > th dose dependent rect. 2 16
682 113.93 wind 7.0 270 < th dose independent rect. 2 5
697 113.94 atmosphere 995.0 10 > th dose dependent rect. 5 5
716 113.97 temperature 10.0 270 > th dose independent rect. 2 5
720 113.97 humidity 50.0 270 > th dose independent rect. 2 5
723 113.97 atmosphere 1015.0 270 < th dose independent rect. 2 5
735 113.97 temperature 10.0 270 > th dose independent rect. 7 19
742 113.97 wind 9.0 90 < th dose dependent rect. 4 5
771 114.00 wind 1.0 270 > th dose independent rect. 7 7
782 114.00 wind 9.0 270 < th dose independent rect. 7 19
785 114.00 precipitation 0.1 270 < th dose independent rect. 7 19
788 114.00 precipitation 0.1 270 < th dose dependent rect. 7 19
789 114.01 wind 5.0 270 < th dose independent rect. 3 3
792 114.01 wind 9.0 90 < th dose independent rect. 4 5
793 114.01 temperature 10.0 90 > th dose independent rect. 4 5
797 114.01 atmosphere 1015.0 90 < th dose independent rect. 4 5
800 114.01 temperature 10.0 90 > th dose independent rect. 9 19
803 114.01 radiation 10.0 10 > th dose independent rect. 15 23
844 114.06 wind 9.0 270 < th dose dependent rect. 4 2
847 114.07 temperature 10.0 270 > th dose dependent rect. 3 4
883 114.09 humidity 90.0 10 < th dose dependent rect. 9 7
890 114.11 radiation 10.0 270 < th dose independent rect. 5 1
911 114.12 temperature 20.0 10 > th dose independent rect. 7 9
913 114.12 radiation 20.0 10 < th dose independent rect. 16 17
929 114.13 wind 9.0 90 < th dose independent rect. 9 19
939 114.14 humidity 50.0 10 > th dose dependent rect. 5 14
989 114.19 humidity 50.0 270 > th dose dependent rect. 2 5